IML-DKFZ / nnunet-workshop
☆45Updated last year
Alternatives and similar repositories for nnunet-workshop:
Users that are interested in nnunet-workshop are comparing it to the libraries listed below
- AeroPath: An airway segmentation benchmark dataset with challenging pathology☆35Updated 9 months ago
- End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Ma…☆62Updated 4 years ago
- [Nature Machine Intelligence 2024] Code and evaluation repository for the paper☆103Updated 2 weeks ago
- Medical Image Radiomics Processor☆62Updated 3 weeks ago
- A package to compute medical segmentation metrics.☆155Updated 8 months ago
- SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI☆77Updated 3 months ago
- Official repository for autoPET I+II machine lerning challenge☆69Updated 7 months ago
- Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imag…☆46Updated 2 months ago
- ☆50Updated last year
- Annotations for the PI-CAI Challenge: Public Training and Development Dataset☆57Updated 6 months ago
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆25Updated last year
- Precision medicine toolbox☆69Updated 11 months ago
- ☆108Updated last month
- DICOM RT-Struct to mask☆101Updated last year
- Neural Pre Processing is an end-to-end weakly supervised learning approach for converting raw head MRI images to intensity-normalized, sk…☆27Updated last year
- Segmentation deep learning ALgorithm based on MONai toolbox: single and multi-label segmentation software developed by QIMP team-Vienna.☆121Updated 3 years ago
- Robust Brain Extraction Tool for CT Head Images☆45Updated 4 years ago
- Streamline deep learning experiments using config files☆44Updated this week
- 💥 Command line tool for automatic liver parenchyma and liver vessel segmentation in CT using a pretrained deep learning model☆66Updated 5 months ago
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆86Updated 5 months ago
- Transparent and reproducible medical image processing pipelines in Python.☆44Updated this week
- Morphological organ segmentation for CT scans☆20Updated 4 years ago
- Computed tomography to body composition (Comp2Comp).☆71Updated 2 months ago
- Processing Library and Analysis Toolkit for Medical Imaging in Python☆124Updated this week
- This is a 3D Slicer extension for segmentation and spatial reconstruction of infiltrated, collapsed, and emphysematous areas in lung CT.☆75Updated 5 months ago
- ☆66Updated 11 months ago
- ☆36Updated 4 years ago
- The official repository of the 2023 Kidney Tumor Segmentation Challenge (KiTS23)☆96Updated 3 weeks ago
- Integrating advanced UNet architectural features into nnUNet framework.☆22Updated last year
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆82Updated 2 years ago