DIAGNijmegen / picai_baseline
Baseline AI models for 3D csPCa detection/diagnosis in bpMRI
☆45Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for picai_baseline
- Annotations for the PI-CAI Challenge: Public Training and Development Dataset☆49Updated 2 months ago
- Preprocessing 3D medical images and image archives —geared towards prostate cancer detection in MRI.☆19Updated last month
- MICCAI 2024: nnUNet incorporating additional baselines as SAMed️, Mamba Variants, and MedNeXT to establish a benchmark for segmentation c…☆65Updated 2 months ago
- ☆26Updated 5 months ago
- ☆135Updated 2 months ago
- Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]☆27Updated last year
- Code and evaluation repository for the paper☆83Updated last week
- Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…☆77Updated last month
- ☆33Updated 3 months ago
- SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI☆65Updated 3 weeks ago
- ☆35Updated last year
- Neural Pre Processing is an end-to-end weakly supervised learning approach for converting raw head MRI images to intensity-normalized, sk…☆26Updated 9 months ago
- Implemention of the Paper "MultiTalent: A Multi-Dataset Approach to Medical Image Segmentation"☆49Updated 10 months ago
- This repository contains code used to prepare the LUMIERE Glioblastoma dataset.☆18Updated 9 months ago
- Computed tomography to body composition (Comp2Comp).☆62Updated 4 months ago
- Hierarchical probabilistic 3D U-Net, with attention mechanisms (—𝘈𝘵𝘵𝘦𝘯𝘵𝘪𝘰𝘯 𝘜-𝘕𝘦𝘵, 𝘚𝘌𝘙𝘦𝘴𝘕𝘦𝘵) and a nested decoder str…☆39Updated 2 years ago
- The official repository of the 2023 Kidney Tumor Segmentation Challenge (KiTS23)☆81Updated 8 months ago
- ☆52Updated 9 months ago
- Code for "Segment Anything Model for Medical Image Analysis: an Experimental Study" in Medical Image Analysis☆146Updated 5 months ago
- Grand Challenge wrapper for whole-gland prostate segmentation with nnUNet☆14Updated 11 months ago
- Config-based framework for organized and reproducible deep learning. MONAI Bundle + PyTorch Lightning.☆22Updated last week
- A 3D medical Detection Transformer library. Papers accepted @ MIDL22 & MELBA23/02.☆51Updated 4 months ago
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆77Updated 2 years ago
- Evaluation of 3D detection and diagnosis performance —geared towards prostate cancer detection in MRI.☆20Updated 2 weeks ago
- ☆71Updated 3 months ago
- This repository contains codes for AortaSeg24 Grand-Challenge.☆16Updated 4 months ago
- The official website for uniGradICON: A Foundation Model for Medical Image Registration☆82Updated this week
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆75Updated last month
- Precision medicine toolbox☆60Updated 7 months ago
- End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Ma…☆55Updated 4 years ago