Alternatives and similar repositories for SmartR

Users that are interested in SmartR are comparing it to the libraries listed below

• CNAG-Biomedical-Informatics / convert-pheno
  A software toolkit for the interconversion of standard data models for phenotypic data
  ☆14Updated 2 months ago
• NCBI-Hackathons / PubRunner
  Framework for running text mining tools on latest publications. Main page at:
  ☆14Updated 3 years ago
• leekgroup / derfinder
  R package for DER Finder, a method for differential expression analysis of RNA-seq data
  ☆22Updated 10 years ago
• opentargets-archive / data_pipeline
  Code for the data processing pipeline
  ☆17Updated 4 years ago
• PavlidisLab / neuroexpresso
  Gene expression in neuroexpresso database
  ☆18Updated 8 months ago
• ENCODE-DCC / snovault
  The SnoVault general purpose hybrid object-relational database
  ☆16Updated last year
• chop-dbhi / data-models
  Collection of various biomedical data models in parseable formats.
  ☆28Updated 3 weeks ago
• sbg / sevenbridges-r
  Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
  ☆35Updated 3 years ago
• BenGlicksberg / PatientExploreR
  Dynamic visualization of Electronic Health Record data in the OMOP framework
  ☆29Updated 4 years ago
• facilebio / FacileAnalysis
  Modular & interactive analysis components for bioinformatics
  ☆17Updated 2 months ago
• BenGlicksberg / ROMOP
  R package to easily interface with OMOP-formatted EHR data.
  ☆36Updated 5 years ago
• rpsychologist / PubMed
  DEPRECATED: PubMed datamining in R
  ☆44Updated 7 years ago
• OHDSI / FuzzyForest
  [Under development] Random classification and regression trees
  ☆17Updated 9 years ago
• ISA-tools / biopy-isatab
  Python parser for ISAtab, a biological file format for experimental metadata
  ☆16Updated 8 years ago
• nmdp-bioinformatics / dash
  Data Standards Hackathon for NGS based typing.
  ☆13Updated 5 months ago
• ISA-tools / Risa
  Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…
  ☆21Updated 6 years ago
• fredhutchio / fredhutch.io
  computational training at Fred Hutch
  ☆12Updated 4 years ago
• raphael-group / gd3
  Javascript library for visualizing genomics data with D3.
  ☆19Updated 8 years ago
• monarch-initiative / monarchr
  R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.
  ☆14Updated last month
• transmart / transmartApp
  tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlati…
  ☆71Updated 6 years ago
• wikipathways / pvjs
  JavaScript-based pathway viewer and editor
  ☆35Updated 4 months ago
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆47Updated 3 weeks ago
• hestiri / DQe-c
  DQe-c is a tool for examining completeness in clinical research data repositories.
  ☆8Updated 7 years ago
• boutroslab / HTSvis
  A web app for exploratory data analysis of high-throughput screens (HTS)
  ☆17Updated 6 years ago
• bjcairns / ukbschemas
  Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi
  ☆20Updated 4 years ago
• tmuetze / Bioconductor_RCy3_the_new_RCytoscape
  Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST
  ☆16Updated 7 years ago
• Bioconductor / GoogleGenomics
  [DEPRECATED] An R package for Google Genomics API queries.
  ☆45Updated 2 years ago
• greenelab / generic-expression-patterns
  Distinguishing between generic and experiment-specific gene expression signals.
  ☆12Updated 2 years ago
• elifesciences / elife-tools
  Python library for parsing eLife article XML data.
  ☆15Updated last month
• StatGenPRD / STOPGAP
  Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…
  ☆11Updated 5 years ago