Alternatives and similar repositories for SmartR:

Users that are interested in SmartR are comparing it to the libraries listed below

• hestiri / DQe-c
  DQe-c is a tool for examining completeness in clinical research data repositories.
  ☆8Updated 7 years ago
• chop-dbhi / data-models
  Collection of various biomedical data models in parseable formats.
  ☆28Updated last month
• transmart / transmartApp
  tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlati…
  ☆71Updated 6 years ago
• CNAG-Biomedical-Informatics / convert-pheno
  A software toolkit for the interconversion of standard data models for phenotypic data
  ☆12Updated last week
• BenGlicksberg / PatientExploreR
  Dynamic visualization of Electronic Health Record data in the OMOP framework
  ☆28Updated 3 years ago
• raphael-group / magi
  A web application from the Raphael Lab for mutation annotation and genome interpretation.
  ☆20Updated 7 years ago
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆36Updated last year
• nmdp-bioinformatics / dash
  Data Standards Hackathon for NGS based typing.
  ☆13Updated last month
• all-of-us / data-browser
  All of Us public data browser.
  ☆13Updated this week
• dfci / matchminer
  MatchMiner: An open source computational platform for matching genomic profiles to precision cancer medicine clinical trials
  ☆42Updated 2 years ago
• thehyve / glowing-bear
  The open source cohort selection and analysis interface
  ☆31Updated last year
• NCBI-Hackathons / PubRunner
  Framework for running text mining tools on latest publications. Main page at:
  ☆14Updated 2 years ago
• researchcompendia / researchcompendia
  A proof of concept for a research compendia webapp
  ☆27Updated 10 years ago
• monarch-initiative / phenol
  phenol: Phenotype ontology library
  ☆23Updated 2 weeks ago
• OHDSI / Genomic-CDM
  Repository for development of the genomic module of the CDM.
  ☆20Updated 5 years ago
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆46Updated this week
• yakneens / butler
  Butler is a framework for running scientific workflows on public and academic clouds.
  ☆69Updated 5 years ago
• monarch-initiative / monarch-legacy
  Monarch web application and API
  ☆42Updated 5 years ago
• monarch-initiative / monarchr
  R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.
  ☆14Updated 3 weeks ago
• cBioPortal / oncoprintjs
  OncoPrint visualization
  ☆23Updated 2 years ago
• biocaddie / WG3-MetadataSpecifications
  WG3 Metadata Specification
  ☆28Updated 6 years ago
• wikipathways / pvjs
  JavaScript-based pathway viewer and editor
  ☆34Updated last month
• biobanking / biobanking
  Ontology for Biobanking
  ☆15Updated 8 months ago
• monarch-initiative / HpoTextMining
  Perform text mining for identification of HPO terms in free text from scientific publication.
  ☆12Updated 9 months ago
• OHDSI / FuzzyForest
  [Under development] Random classification and regression trees
  ☆16Updated 9 years ago
• isb-cgc / ISB-CGC-pipelines
  Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.
  ☆12Updated 8 years ago
• FDA / fda-hive
  FDA High-performance Integrated Virtual Environment (HIVE)
  ☆37Updated 4 years ago
• opentargets-archive / data_pipeline
  Code for the data processing pipeline
  ☆17Updated 3 years ago
• OHDSI / PheValuator
  An R package for evaluating phenotype algorithms.
  ☆17Updated 5 months ago
• EBISPOT / DUO
  Ontology for consent codes and data use requirements
  ☆67Updated 2 years ago