sbl-sdsc / coronavirus-knowledge-graph
OBSOLETE: Prototype Neo4j Knowledge Graph for Coronavirus outbreaks (see NEW VERSION: https://github.com/covid-19-net/covid-19-community)
☆18Updated 3 years ago
Related projects: ⓘ
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆26Updated 4 months ago
- An information extraction system for free-text eligibility criteria☆36Updated 5 years ago
- Medical Relations and Entities Extraction☆35Updated 2 years ago
- ☆23Updated 3 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆34Updated 4 years ago
- Community effort to build a Neo4j Knowledge Graph (KG) that links heterogeneous data about COVID-19☆118Updated 2 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆69Updated last week
- MedXN is a medication normalization system built upon Apache UIMA framework.☆22Updated 7 months ago
- A DeepWalk implementation for ontologies using NetworkX and Gensim☆19Updated 7 years ago
- Bio-YODIE is GATE's biomedical named entity linking pipeline.☆17Updated 4 years ago
- ☆16Updated 6 years ago
- Website for ML4H Symposium☆22Updated 3 months ago
- UMLS Graph database for semantic queries☆19Updated last year
- An NLP pipeline for COVID-19 surveillance used in the Department of Veterans Affairs Biosurveillance.☆13Updated last year
- An ontology matcher for matching entities between knowledgebases☆66Updated last year
- Clinical NLP workshop for ODSC☆39Updated 4 years ago
- Extracting narrative timelines (i.e. order and timing of events) from text☆20Updated 5 years ago
- examples of use of the neosemantics plugin☆36Updated 3 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Updated 2 years ago
- Python text processing, pattern matching, and NLP framework☆61Updated last year
- Tutorial and hands-on notebook on using the Knowledge Graph Toolkit (KGTK)☆78Updated 2 years ago
- Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model☆34Updated 6 years ago
- ☆94Updated 2 years ago
- Using word embeddings (word2vec) for ontology learning☆20Updated 7 years ago
- Pipeline for building Machine Learning Classifiers for the diagnosis of EHR text-data. We used this pipeline for our study, published her…☆11Updated last year
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆25Updated last year
- ☆21Updated last year
- Creating a Knowledge Graph of 44000 COVID-19 scholarly articles☆21Updated 4 years ago
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Updated last year
- ☆16Updated 3 years ago