Alternatives and similar repositories for APE

Users that are interested in APE are comparing it to the libraries listed below

• petermr / pyami
  Semantic Reader of the Scientific Literature
  ☆12Updated last year
• ISA-tools / stato
  This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, p…
  ☆33Updated 3 months ago
• enanomapper / ontologies
  The eNanoMapper ontology
  ☆19Updated last month
• OBOFoundry / COB
  An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)
  ☆42Updated this week
• gyorilab / indra_db
  A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…
  ☆17Updated 2 weeks ago
• PROconsortium / PRoteinOntology
  ☆15Updated last month
• chemkg / chemrof
  Schema for chemistry ontology classes
  ☆18Updated last month
• NFDI4Chem / knowledge_base
  A place for all knowledge regarding Research Data Management (RDM) in Chemistry
  ☆11Updated last week
• geneontology / pathways2GO
  Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
  ☆10Updated this week
• OBF / FALDO
  Feature Annotation Location Description Ontology
  ☆34Updated 5 years ago
• allysonlister / swo
  The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, licences, provenance and associate…
  ☆44Updated 2 years ago
• monarch-initiative / talisman
  LLM-based gene function enrichment tool
  ☆13Updated 3 months ago
• OBOFoundry / OBO-Dashboard
  Summary Dashboard for Open Biological and Biomedical Ontologies
  ☆21Updated 6 months ago
• linkml / schema-automator
  Automated assistance for the schema development lifecycle
  ☆47Updated 2 weeks ago
• INCATools / boomer
  Bayesian OWL ontology merging
  ☆29Updated last week
• microbiomedata / nmdc-schema
  National Microbiome Data Collaborative (NMDC) unified data model
  ☆33Updated this week
• bio-tools / biotoolsSchema
  biotoolsSchema : Tool description data model for computational tools in life sciences
  ☆38Updated last year
• eMetaboHUB / Forum-DiseasesChem
  A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.
  ☆16Updated 10 months ago
• RobokopU24 / ORION
  Code that parses datasets from various sources and converts them to load graph databases.
  ☆16Updated this week
• ontology-tools / py-horned-owl
  A library for Web Ontology Language in Python created using a bridge from horned-owl to python using PyO3.
  ☆15Updated 2 weeks ago
• EBISPOT / zooma
  ZOOMA - Optimal Ontology Mapping Application. http://www.ebi.ac.uk/spot/zooma.
  ☆26Updated last month
• linkml / schemasheets
  Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats
  ☆44Updated last month
• paperfetcher / paperfetcher
  Pip-installable Python package to automate handsearching and citation searching for systematic reviews.
  ☆12Updated 10 months ago
• INCATools / kgcl
  Datamodel for KGCL (Knowledge Graph Change Language)
  ☆17Updated 6 months ago
• mgijax / mammalian-phenotype-ontology
  Standard terms for annotating mammalian phenotypic data
  ☆19Updated this week
• cthoyt / pystow
  👜 Easily pick a place to store data for your Python code.
  ☆37Updated 2 weeks ago
• fastobo / fastobo-py
  Faultless AST for Open Biomedical Ontologies in Python.
  ☆29Updated 3 weeks ago
• linkml / linkml-project-cookiecutter
  A cookiecutter for linkml projects. An equivalent of `linkml-ws new project-name`.
  ☆27Updated 3 months ago
• semanticchemistry / semanticchemistry
  Chemical Information Ontology
  ☆17Updated 3 months ago
• INCATools / ubergraph
  Integrated OBO ontology store
  ☆46Updated 3 weeks ago