Alternatives and similar repositories for linkedct

Users that are interested in linkedct are comparing it to the libraries listed below

• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated 2 years ago
• flaxsearch / BioSolr
  A project aiming "to significantly advance the state of the art with regard to indexing and querying biomedical data with freely availabl…
  ☆77Updated 10 months ago
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆88Updated last year
• dermatologist / pyomop
  Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!
  ☆43Updated last week
• HHS / uts-rest-api
  A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API
  ☆173Updated 2 years ago
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆32Updated last year
• OHDSI / Athena
  Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM
  ☆61Updated 2 months ago
• ebegoli / SynthNotes
  A generator of synthetic psychiatric notes.
  ☆17Updated 5 years ago
• lisavirginia / clinical-abbreviations
  ☆64Updated 4 years ago
• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆41Updated 4 years ago
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆192Updated last year
• opentrials / registers
  A Data Package which is a database of public and private registers of clinical trials.
  ☆35Updated 9 years ago
• OHDSI / AchillesWeb
  Interactive web site for reviewing the results of the Achilles R package.
  ☆18Updated 2 years ago
• p2 / ClinicalTrialsNLP
  Classes for ClinicalTrials.gov related projects
  ☆47Updated 5 years ago
• i2b2-omop / i2o-transform
  PCORnet Ontology to OMOP - beta!
  ☆11Updated last year
• gertvv / ictrp-retrieval
  Retrieve and normalize records from ICTRP
  ☆10Updated 5 years ago
• beaunorgeot / philter_ucsf
  clinical free text de-identification software
  ☆41Updated 6 years ago
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆37Updated last year
• ddomingof / PubMed2PDF
  A Python package to download full article PDFs from OA publications
  ☆45Updated 4 months ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆67Updated 10 months ago
• Neo4jSolutions / patient-journey-model
  ☆22Updated 8 months ago
• fhircat / FHIROntopOMOP
  FHIR Ontop OMOP Implementation
  ☆18Updated last year
• OHDSI / OMOP-Queries
  ☆27Updated 6 years ago
• DiseaseOntology / SymptomOntology
  The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…
  ☆41Updated last year
• Dana-Farber-AIOS / GPT4DFCI
  A private and secure generative AI tool, based on GPT-4 and deployed for non-clinical use at Dana-Farber Cancer Institute
  ☆61Updated 4 months ago
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆40Updated last year
• dermatologist / fhiry
  FHIR to pandas dataframe for data analytics, AI and ML!
  ☆37Updated last week
• opentargets-archive / library-beam
  Open Targets Library ETL Pipeline | Apache Beam
  ☆16Updated 4 years ago
• ijmarshall / trialstreamer
  Living database of randomized controlled trials (RCTs)
  ☆20Updated 2 years ago
• metapub / metapub
  Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
  ☆119Updated 4 months ago