networkinference / ARNILinks
Algorithm for Revealing Network Interactions (ARNI) from nonlinear collective dynamics
☆29Updated 8 years ago
Alternatives and similar repositories for ARNI
Users that are interested in ARNI are comparing it to the libraries listed below
Sorting:
- Biologically-informed neural networks☆39Updated 5 years ago
- Gumbel Graph Network (GGN) : A General Deep Learning Framework for Network Reconstruction☆71Updated 6 years ago
- ☆40Updated 4 years ago
- Julia library for homological persistence☆126Updated last year
- Entropy, mutual information and higher order measures from information theory, with various estimators and discretisation methods.☆67Updated 3 years ago
- Uncertainty and causal emergence in complex networks☆122Updated 4 years ago
- SIAN (Structural Identifiability ANalyser) is a software for assessing structural identifiability of ODE models.☆22Updated 2 years ago
- Optimal transport algorithms for Julia☆112Updated 6 months ago
- Automated dynamical systems inference☆38Updated 2 years ago
- Flexible and efficient persistent homology computation.☆78Updated 3 months ago
- A Julia package for topological data analysis☆40Updated 5 years ago
- Dimensionality Reduction with Eilenberg-MacLane Coordinates☆42Updated 7 months ago
- A Julia implementation of sparse Gaussian processes via path-wise doubly stochastic variational inference.☆33Updated 5 years ago
- A package to represent high-order relationships between objects of any type☆41Updated 2 years ago
- A Julia package for fitting VAEs to single-cell data using count distributions.☆24Updated 2 years ago
- TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics☆130Updated last year
- Code associated to the paper 'Simplicial models of social contagion' Nat. Commun. (2019)☆54Updated 4 years ago
- REGAIN (Regularised Graphical Inference)☆29Updated 2 years ago
- A Python package for General Graphical Lasso computation☆40Updated 11 months ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated last week
- Neural parameter calibration for multi-agent models. Uses neural networks to estimate marginal densities on parameters and networks☆32Updated 2 weeks ago
- ☆15Updated 2 years ago
- CompleX Group Interactions (XGI) is a Python package for higher-order networks.☆234Updated last month
- Finite State Projection algorithms for chemical reaction networks☆20Updated 3 weeks ago
- Model and represent Simplicial Complexes and their Cochains. Provides a clean interface to calculate Betti numbers and (discrete) Hodge d…☆18Updated last year
- Graphical modelling with time series data using an ODE model☆12Updated 3 years ago
- ☆45Updated 2 years ago
- ☆30Updated 7 years ago
- Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations☆47Updated last month
- Neural Estimation of Stochastic Simulations for Inference and Exploration☆20Updated 3 years ago