Gzip Decompression and Random Access for Modern Multi-Core Machines
☆457Nov 30, 2025Updated 7 months ago
Alternatives and similar repositories for rapidgzip
Users that are interested in rapidgzip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 9 months ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆43May 21, 2026Updated last month
- Truly parallel gzip decompression☆123Aug 20, 2019Updated 6 years ago
- Grep for FASTQ files☆104Apr 30, 2026Updated 2 months ago
- ☆32Dec 16, 2022Updated 3 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated last year
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- WFA-lib: Wavefront alignment algorithm library v2☆220Mar 18, 2026Updated 3 months ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆95Feb 26, 2026Updated 4 months ago
- Simple and transparent support for compressed files.☆81Jul 1, 2026Updated last week
- k-mers and the like☆23Updated this week
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated last month
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Jun 21, 2026Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆61May 24, 2026Updated last month
- BWT construction and search☆129Jan 14, 2026Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A very fast interval tree data structure☆133Feb 3, 2025Updated last year
- Self-contained, multi-threaded fasta/q parser☆50Mar 10, 2026Updated 3 months ago
- Aligns short reads using dynamic seed size with strobemers☆203Updated this week
- Assembled Genomes Compressor☆185May 6, 2026Updated 2 months ago
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 7 months ago
- vcfdist: Accurately benchmarking phased variant calls☆87Feb 23, 2026Updated 4 months ago
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 9 months ago
- ☆17Apr 6, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆140Jun 23, 2024Updated 2 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆69Apr 10, 2025Updated last year
- A command line utilty for working with BINSEQ files☆39Updated this week