Gzip Decompression and Random Access for Modern Multi-Core Machines
☆451Nov 30, 2025Updated 4 months ago
Alternatives and similar repositories for rapidgzip
Users that are interested in rapidgzip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast parallel random access to bzip2 and gzip files in Python☆83Apr 7, 2026Updated last week
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 6 months ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Mar 30, 2026Updated 2 weeks ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- A bridge for libzstd-seek to python. Based on mxmlnkn/indexed_bzip2☆27Mar 18, 2026Updated 3 weeks ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Mar 24, 2026Updated 3 weeks ago
- Truly parallel gzip decompression☆124Aug 20, 2019Updated 6 years ago
- Grep for FASTQ files☆104Mar 28, 2026Updated 2 weeks ago
- ☆32Dec 16, 2022Updated 3 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- De Bruijn graph representation in low memory☆35Jul 6, 2024Updated last year
- WFA-lib: Wavefront alignment algorithm library v2☆211Mar 18, 2026Updated 3 weeks ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆91Feb 26, 2026Updated last month
- Stateless, zlib-compatible, and very fast compression library -- http://libslz.org☆34Updated this week
- Simple and transparent support for compressed files.☆81Feb 27, 2026Updated last month
- k-mers and the like☆22Apr 6, 2026Updated last week
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- A pairwise sequence aligner written in Rust☆153Jan 27, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- base-accurate DNA sequence alignments using WFA and mashmap3☆214Mar 20, 2026Updated 3 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 7 months ago
- A very fast interval tree data structure☆131Feb 3, 2025Updated last year
- BWT construction and search☆127Jan 14, 2026Updated 3 months ago
- Assembled Genomes Compressor☆179Mar 26, 2026Updated 2 weeks ago
- Self-contained, multi-threaded fasta/q parser☆48Mar 10, 2026Updated last month
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- vcfdist: Accurately benchmarking phased variant calls☆85Feb 23, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago
- ☆16Apr 6, 2023Updated 3 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Aligns short reads using dynamic seed size with strobemers☆194Updated this week
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆139Jun 23, 2024Updated last year
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago