Yet Another Hidden Markov Model repository.
☆250Dec 2, 2015Updated 10 years ago
Alternatives and similar repositories for yahmm
Users that are interested in yahmm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, flexible and easy to use probabilistic modelling in Python.☆3,546Mar 6, 2025Updated last year
- Sequence learning toolkit for Python☆708Mar 24, 2023Updated 3 years ago
- ☆578Jan 25, 2025Updated last year
- Find the posterior decoding of a long sequence of observations.☆17Jul 29, 2010Updated 16 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Boosting and ensemble learning in Python.☆54Apr 6, 2015Updated 11 years ago
- Contains tools for analyzing time-series data.☆11May 8, 2013Updated 13 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Feb 4, 2016Updated 10 years ago
- Simple structured learning framework for python☆668Sep 23, 2021Updated 5 years ago
- ☆36Aug 13, 2020Updated 6 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 5 months ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆46Jun 16, 2026Updated 4 months ago
- Tools used to analyze data from nanopore-based experiments.☆33Feb 1, 2015Updated 11 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Rapid Machine Learning Prototyping in Python☆653Nov 11, 2015Updated 10 years ago
- HMM Implementation in Python☆36Mar 13, 2015Updated 11 years ago
- Breze with all the stuff.☆96Sep 2, 2016Updated 10 years ago
- ☆117Nov 7, 2022Updated 4 years ago
- A skip dict is a Python dictionary which is permanently sorted by value.☆19Sep 25, 2014Updated 12 years ago
- Scikit-learn compatible tools using theano☆364Feb 28, 2017Updated 9 years ago
- SciKit-Learn Laboratory (SKLL) makes it easy to run machine learning experiments.☆561Jun 12, 2025Updated last year
- ogrisel's utility extensions for scikit-learn☆24Jul 31, 2013Updated 13 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Combines the ease of use of scikit-learn with the power of Theano/Lasagne☆951Jul 6, 2023Updated 3 years ago
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- The hole story. See hypertidy/silicate for the rest of the donut.☆17Aug 3, 2016Updated 10 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- MultiQC plugin for bcbio_nextgen pipeline☆10Oct 29, 2020Updated 6 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Jun 22, 2015Updated 11 years ago
- Code, examples, reading list for JHU Frontiers of Sequencing Data Analysis class☆24Feb 3, 2014Updated 12 years ago
- A suite of javascript apps for visualizing sequencing data☆12Nov 18, 2013Updated 12 years ago
- A unified array job submitter for LSF, SGE/UGE and Slurm☆32Oct 15, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- NumPy and Pandas interface to Big Data☆3,190Sep 29, 2023Updated 3 years ago
- GPU-Accelerated Deep Learning Library in Python☆1,168Dec 29, 2020Updated 5 years ago
- Lightweight library to build and train neural networks in Theano☆3,856Mar 26, 2022Updated 4 years ago
- Randomized online matrix factorization☆140Jun 16, 2020Updated 6 years ago
- Spearmint is a package to perform Bayesian optimization according to the algorithms outlined in the paper: Practical Bayesian Optimizati…☆1,393Jul 21, 2017Updated 9 years ago
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 12 years ago
- DEPRECATED Lightweight bioinformatics pipeline tools using iPython☆14Dec 11, 2015Updated 10 years ago
Are these results useful?