Scientific Computing in Python, a practical and ultimate tutorials
☆14Mar 7, 2023Updated 3 years ago
Alternatives and similar repositories for ScPyT
Users that are interested in ScPyT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package built on RMarkdown to create biosketches (e.g. for NIH)☆22Feb 25, 2022Updated 4 years ago
- SODAR Core: A Django-based framework for building scientific data management web apps☆13Updated this week
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆16Nov 11, 2022Updated 3 years ago
- PHi-C: deciphering Hi-C data into polymer dynamics☆12Aug 12, 2020Updated 6 years ago
- ☆14Feb 12, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Explore the Hi-Cs☆12Jul 25, 2026Updated 2 months ago
- Computational Biology- Spring 2021☆50Nov 1, 2021Updated 4 years ago
- Matlab functions for flexible plotting of intracranial or fMRI data on 3D brain models☆14Oct 15, 2019Updated 6 years ago
- ☆12Jun 16, 2023Updated 3 years ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- Functional Associations using Variational Autoencoders☆43Updated this week
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- Scripts to create cartoons of 3D genomes☆12Feb 27, 2024Updated 2 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Diploid personal genome assembly and comprehensive variant detection based on linked-reads☆21Apr 28, 2023Updated 3 years ago
- A modular, containerized pipeline for PRO-seq data processing☆13Mar 6, 2026Updated 7 months ago
- A Python framework for structural bioinformatics.☆14Jan 20, 2024Updated 2 years ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- ☆12Mar 18, 2026Updated 6 months ago
- A Framework for Chromatin Architecture Data Processing, Handling and Analysis☆12Updated this week
- Demonstrating best practices for bioinformatics command line tools☆24Jun 2, 2026Updated 4 months ago
- My modular LaTeX résumé and CV designs☆18Apr 22, 2017Updated 9 years ago
- Simulating virus evolution and epidemiology☆21Feb 22, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 4 years ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆14Jun 21, 2022Updated 4 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 9 months ago
- A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.☆11Feb 10, 2025Updated last year
- HPC Python lesson materials☆62Jan 20, 2023Updated 3 years ago
- Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R☆17Nov 9, 2015Updated 10 years ago
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 6 years ago
- Colorblind-friendly, perceptually uniform palettes for pymol☆22Jan 25, 2021Updated 5 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆23May 21, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated last year
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Jul 13, 2023Updated 3 years ago
- Machine learning model for crop yield prediction☆20Jun 22, 2018Updated 8 years ago
- GENome Organisation Visual Analytics☆16Dec 24, 2021Updated 4 years ago
- Genomic VCF to tab-separated values☆49May 23, 2026Updated 4 months ago
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆12Mar 22, 2023Updated 3 years ago
- My first RAG application☆10Jul 29, 2024Updated 2 years ago