coderxio / sagerxLinks
Open drug data pipelines curated by pharmacists.
☆71Updated last month
Alternatives and similar repositories for sagerx
Users that are interested in sagerx are comparing it to the libraries listed below
Sorting:
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆56Updated this week
- Python package for converting FHIR as JSON into flat files (CSVs)☆31Updated 2 months ago
- An ASGI FHIR API framework built on top of FastAPI and FHIR Resources☆55Updated last month
- [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM☆34Updated 2 months ago
- A tool to help improve data quality standards in observational data science.☆169Updated last week
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 4 years ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆119Updated 10 months ago
- FHIR to pandas dataframe for data analytics, AI and ML!☆44Updated last week
- A starter dbt project and synthetic claims dataset for trying out the Tuva Project.☆29Updated 3 months ago
- Main repo including core data model, data marts, data quality tests, and terminology sets.☆279Updated last week
- This connector is a dbt project that maps Medicare CCLF claims data to the Tuva Input Layer.☆15Updated 2 weeks ago
- A Python implementation of the tools from H-CUP (Healthcare Cost and Utilization Project)☆66Updated 2 years ago
- Virtual Machine containing SynPUF data in OMOP CDM, a RDBS including query client, WebAPI, ATLAS, R and Python.☆58Updated 4 years ago
- HCC Algorithm that works with FHIR and 837☆34Updated 2 weeks ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆38Updated 2 years ago
- drgpy is a Python library for assigning a combination of diagnosis and procedure codes to Diagnosis Related Groups (MS-DRG) that is used …☆63Updated 2 years ago
- Course materials for OHDSI ETL tutorial☆53Updated 2 months ago
- Improving Public Access to Aggregate Content of ClinicalTrials.gov☆165Updated 2 months ago
- A Python FHIR specification parser and class generator☆180Updated last year
- More realistic synthetic medication data.☆17Updated 3 years ago
- HEDIS FHIR-based Quality Reporting☆29Updated 6 years ago
- FHIR to OMOP using PySpark on AWS Glue☆14Updated 4 years ago
- Pilot model and converter for integration of radiology data into OMOP-CDM☆23Updated 6 years ago
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated 4 months ago
- FHIRPath implementation in Python.☆71Updated 2 months ago
- Workproducts to ETL CMS datasets into OMOP Common Data Model☆102Updated 3 years ago
- The Book of OHDSI repository☆123Updated last year
- An R package that facilitates access to a variety of OMOP CDM sample data sets.☆46Updated 7 months ago
- A package of clinically validated score calculations designed for easy integration into proprietary software systems.☆31Updated 3 weeks ago
- ☆17Updated 7 years ago