Alternatives and similar repositories for cs4372

Users that are interested in cs4372 are comparing it to the libraries listed below

• d3b-center / OpenPedCan-analysis
  The analysis repository for the Open Pediatric Cancer Project
  ☆23Updated 2 weeks ago
• YuLab-SMU / DOSE
  Disease Ontology Semantic and Enrichment analysis
  ☆119Updated 3 months ago
• sankaranlab / mito-genotyping
  Repo for scripts for Ludwig et al mtDNA genotyping
  ☆16Updated 5 years ago
• TrinityCTAT / ctat-genome-lib-builder
  Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components
  ☆10Updated 2 months ago
• AlexsLemonade / OpenPBTA-analysis
  The analysis repository for the Open Pediatric Brain Tumor Atlas Project
  ☆104Updated 2 years ago
• mwsill / IlluminaHumanMethylationEPICv2manifest
  ☆10Updated 2 years ago
• seqeralabs / nextflow-tutorial
  Nextflow training material for introductory tutorial
  ☆105Updated 3 years ago
• Sage-Bionetworks / synapseAnnotations
  Sage Bionetworks derived standards for annotating content in Synapse.
  ☆14Updated 3 months ago
• Clinical-Genomics / fusion-report
  Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…
  ☆27Updated last month
• hbctraining / main
  ☆54Updated this week
• pachterlab / kallisto-transcriptome-indices
  Reference transcriptome indices build from kallisto for popular organisms
  ☆42Updated last year
• mxxdxxx / FirebrowseR
  An R client for broads firehose pipeline, providing TCGA data sets
  ☆61Updated 6 years ago
• AlexandrovLab / SigProfilerAssignment
  Assignment of known mutational signatures to individual samples and individual somatic mutations
  ☆59Updated last month
• linnarsson-lab / awesome-single-cell
  List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
  ☆14Updated 8 years ago
• gatk-workflows / gatk3-4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools
  ☆51Updated 5 years ago
• pdiakumis / rock
  Rocking R at UMCCR
  ☆9Updated 4 years ago
• niaid / covid19-time-resolved
  This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…
  ☆15Updated 4 years ago
• broadinstitute / single_cell_portal_core
  Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
  ☆68Updated last week
• broadinstitute / gtex-viz
  GTEx Visualizations
  ☆64Updated 4 years ago
• kanaverse / kana
  Single cell analysis in the browser
  ☆150Updated 3 weeks ago
• hbctraining / Accessing_public_genomic_data
  Tutorials on accessing public reference and genomic data
  ☆30Updated 5 months ago
• sjcockell / lockdown-learning
  Scripts written for my Bioinformatics-along on YouTube: https://www.youtube.com/playlist?list=PLzfP3sCXUnxEu5S9oXni1zmc1sjYmT1L9
  ☆75Updated 3 years ago
• CRG-Barcelona / bwtool
  A tool for bigWig files.
  ☆119Updated 7 years ago
• laurenhsu1 / corral
  Dimensionality reduction and batch integration methods for single cell data
  ☆16Updated 2 years ago
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆173Updated 7 months ago
• raerose01 / deconstructSigs
  deconstructSigs
  ☆142Updated 2 years ago
• TrinityCTAT / ctat-mutations
  Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
  ☆76Updated last year
• nghiavtr / FuSeq
  ☆33Updated 3 years ago
• slowkow / snakefiles
  Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
  ☆93Updated 8 years ago
• VanLoo-lab / ascat
  ASCAT R package
  ☆184Updated 4 months ago