Alternatives and similar repositories for awesome-scroll-tools

Users that are interested in awesome-scroll-tools are comparing it to the libraries listed below

• ScrollPrize / vesuvius
  Now maintained at https://github.com/ScrollPrize/villa/tree/main/vesuvius (this repository archived)
  ☆18Updated 9 months ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆104Updated this week
• ajinkya-kulkarni / PyTextureAnalysis
  PyTextureAnalysis is a Python package for analyzing the texture of images. It includes functions for calculating local orientation, degre…
  ☆30Updated 11 months ago
• KhartesViewer / khartes
  ☆19Updated 2 weeks ago
• MIC-DKFZ / napari-nninteractive
  ☆93Updated last month
• computational-cell-analytics / micro-sam
  Segment Anything for Microscopy
  ☆584Updated this week
• bowang-lab / MedSAMSlicer
  3D Slicer Plugin for Segment anything in medical images
  ☆250Updated 4 months ago
• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆35Updated last year
• imyiningliu / cellstitch
  ☆11Updated last year
• TIO-IKIM / CellViT
  CellViT: Vision Transformers for Precise Cell Segmentation and Classification
  ☆316Updated last month
• ksugar / samapi
  Segment Anything Model API
  ☆99Updated last year
• pcarnah / DeepMitral
  Deep learning based mitral valve segmentation testing
  ☆11Updated 10 months ago
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆36Updated last month
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆89Updated 2 weeks ago
• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆24Updated 2 years ago
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆19Updated 3 months ago
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆77Updated 5 months ago
• MIC-DKFZ / nnInteractive
  nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and la…
  ☆257Updated 2 weeks ago
• jasper-tms / the-BANC-fly-connectome
  Information and python tools for the GridTape-TEM dataset of an adult female fly's Brain And Nerve Cord
  ☆14Updated this week
• bioimage-io / spec-bioimage-io
  Specification for the bioimage.io model description file.
  ☆21Updated 3 weeks ago
• bowang-lab / MedSAM2
  MedSAM2: Segment Anything in 3D Medical Images and Videos
  ☆303Updated last month
• lassoan / SlicerTotalSegmentator
  Fully automatic total body segmentation in 3D Slicer using "TotalSegmentator" AI model
  ☆224Updated 2 months ago
• zeiss-microscopy / libCZI
  Open Source Cross-Platform C++ library to read CZI image files
  ☆72Updated 2 years ago
• ai-mbl / DL-MBL-2022
  Exercise repository for the "Deep Learning for Microscopy Image Analysis" course at the MBL.
  ☆10Updated 3 years ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆100Updated last week
• saalfeldlab / paintera
  ☆109Updated last week
• weigertlab / napari-trackastra
  napari plugin for trackastra
  ☆17Updated 10 months ago
• You-Lab-MIT / SSAI-3D
  Repository for codes in the paper "System-and Sample-agnostic Isotropic 3D Microscopy by Weakly Physics-informed, Domain-shift-resistant …
  ☆12Updated last week
• peng-lab / leonardo_toolset
  ☆14Updated this week
• zaritskylab / DISCOVER
  Visual interpretability of image-based classification models by generative latent space disentanglement
  ☆12Updated 2 months ago