Automating Data Extraction from Scientific Literature and General PDF Files Using Large Language Models and KNIME: An Application in Toxicology
☆11Sep 4, 2026Updated 2 months ago
Alternatives and similar repositories for Data_extraction_workflow
Users that are interested in Data_extraction_workflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Standardization workflow for QSAR-ready chemical structures pre-treatment. See "release" tab for the latest version and sample files!☆25Oct 2, 2024Updated 2 years ago
- US EPA's ctxR: Utilities for Interacting with the CTX APIs in R without prior API knowledge https://www.epa.gov/comptox-tools/computation…☆23Updated this week
- Python package for performing lipidomics analyses☆10Aug 24, 2021Updated 5 years ago
- U.S EPA Benchmark Dose Modeling Software (BMDS)☆14Nov 2, 2026Updated last week
- A dataset of Curie temperatures automatically extracted from scientific literature with the use of the BERT-PSIE pipeline☆16Aug 18, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- US EPA's Toxicity Forecaster (ToxCast) Pipeline. More information on the ToxCast program available here: https://www.epa.gov/comptox-tool…☆46Sep 21, 2026Updated last month
- Convert SMILES (chemical structure) to one-hot matrix.☆10Jan 27, 2021Updated 5 years ago
- A pragmatic interface to RDKit in R☆26Sep 14, 2019Updated 7 years ago
- decidables: Explorable Explanations of Decision Making☆11Jun 28, 2026Updated 4 months ago
- A place for the IEP community to share resources for data analysis☆13Updated this week
- Large Language Models in Molecular Embeddings☆12May 1, 2024Updated 2 years ago
- ET-Tox☆13Oct 4, 2024Updated 2 years ago
- A 100%-free personalizable job-scraper / dashboard that requires zero installation/software/coding. Get a job!☆18Updated this week
- A Python tool for creating and downsampling chemical pointclouds.☆15Sep 10, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Machine Learning based toxicity prediction tool for small molecules.☆11Feb 13, 2024Updated 2 years ago
- ☆12Sep 2, 2026Updated 2 months ago
- ☆13May 13, 2022Updated 4 years ago
- LangGraph template for a simple ReAct agent with an MCP client to access MCP servers as tools☆13Feb 13, 2025Updated last year
- toxpiR R package for the Toxicological Priority Index (ToxPi) algorithm.☆11Jun 15, 2026Updated 4 months ago
- ADEPT: Automated molecular Dynamics Engine for Polymer simulaTions☆17Updated this week
- River version of the Full Multi framework☆11Jul 6, 2023Updated 3 years ago
- ParametrizANI - Fast, Accurate and Free Dihedral Parametrization in the Cloud with TorchANI☆22Jul 28, 2025Updated last year
- ☆15Sep 26, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts and session recordings from the Southern California Coastal Water Research Project's Tidy Tuesday R tutorial series.☆21Oct 15, 2021Updated 5 years ago
- LipidFinder: A computational workflow for discovery of new lipid molecular species☆22Feb 14, 2021Updated 5 years ago
- A benchmark for Large Atomistic Models☆21Updated this week
- A simple Python package to visualize and explain RDKit SlogP_VSA, SMR_VSA, EState_VSA, VSA_EState descriptor and atomic contributions☆15Jul 12, 2026Updated 4 months ago
- Code for the blogpost showing how to use Paquo to interact with, and classify, objects in QuPath with machine learning☆10Sep 6, 2022Updated 4 years ago
- ☆12Oct 21, 2024Updated 2 years ago
- ☆23May 30, 2025Updated last year
- ☆22May 9, 2025Updated last year
- Umbrella repo for the ToxMCP Suite (docs, links, quickstart).☆31Nov 4, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Slicer extensions for computing feature maps of N-Dimensional images using well-known texture analysis methods.☆12Mar 24, 2025Updated last year
- Visium HD segmented cell-level workflow demonstration☆10Jan 22, 2026Updated 9 months ago
- MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses.☆12Jul 25, 2024Updated 2 years ago
- ☆10Jan 17, 2023Updated 3 years ago
- Free and open-source application (command line and GUI) providing QSAR models predictions as well as applicability domain and accuracy as…☆138Oct 14, 2026Updated last month
- A Python interface for NIH Reporter APIs☆12Feb 4, 2025Updated last year
- ☆10Nov 15, 2025Updated 11 months ago
Are these results useful?