Automated bonded parameters for Martini 3
☆28Jul 20, 2025Updated last year
Alternatives and similar repositories for Bartender
Users that are interested in Bartender are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Coarse-Grained SMILES (CGsmiles) A Versatile Line Notation for Molecular Representations Across Multiple Resolutions☆19Oct 2, 2026Updated 3 weeks ago
- Describe and apply transformation on molecular structures and topologies☆152Updated this week
- Build coarse-grained mapping for molecules from a web-GUI☆20Sep 10, 2021Updated 5 years ago
- TS2CG version 2☆29Apr 18, 2026Updated 6 months ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆54Sep 17, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Automatic MARTINI parametrization of small organic molecules☆76May 28, 2025Updated last year
- Martini 3 small molecule database☆74May 13, 2026Updated 5 months ago
- Automatic Martini force field generator for small organic molecules (up to 25 heavy atoms), Martini 3 compatible☆39Oct 1, 2026Updated 3 weeks ago
- Perform polymerization and crosslinking in MARTINI coarse-grained forcefield using GROMACS MD package☆32Jan 21, 2026Updated 9 months ago
- ☆12Jan 1, 2019Updated 7 years ago
- MDverse web scrapper 🔎🔧📄☆15Feb 21, 2026Updated 8 months ago
- C++ toolkit for post-processing molecular dynamics trajectories, with a focus on high-performance static and dynamic analyses of amorphou…☆29Jul 21, 2026Updated 3 months ago
- Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates☆203Oct 22, 2026Updated last week
- Coarse-grained mapping and parametrisation for the Martini 3 forcefield☆23Jul 20, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Generative antibody language models for framework-conditioned CDR design, scoring, and preference-based alignment.☆13Aug 19, 2026Updated 2 months ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆69Aug 2, 2026Updated 2 months ago
- Genetic algorithm to convert 3D-RISM solvent densities to explicit water molecules in binding pockets☆13Dec 19, 2017Updated 8 years ago
- ☆14Jul 17, 2024Updated 2 years ago
- ☆13Jul 11, 2023Updated 3 years ago
- Main repository for METAGUI3☆22Jun 19, 2021Updated 5 years ago
- Mirror of https://git.durrantlab.pitt.edu/jdurrant/dimorphite_dl/☆19Nov 9, 2022Updated 3 years ago
- A voxel based approach for dynamic cluster analysis of molecular dynamics trajectories.☆34Nov 5, 2025Updated 11 months ago
- ☆12Jan 31, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python-based tool to calculate instantaneous interfaces and concentration/orientation profiles from molecular simulation trajectories in …☆12Nov 5, 2019Updated 6 years ago
- ☆23Dec 11, 2024Updated last year
- A Python toolkit for the analyis of lipid membrane simulations☆37Jun 20, 2026Updated 4 months ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆83Mar 27, 2025Updated last year
- DynamiSpectra: Decode molecular motion with precision and power☆24Sep 16, 2025Updated last year
- A high performace ReaxFF/AIMD trajectory analysis tool based on graph theory.☆90Updated this week
- ☆25Mar 8, 2023Updated 3 years ago
- Temperature generator for Replica Exchange MD simulations☆31Dec 14, 2022Updated 3 years ago
- model builder for molecular dynamics simulations☆16Feb 16, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-…☆49Aug 19, 2024Updated 2 years ago
- ☆12Oct 1, 2026Updated 3 weeks ago
- Introduction to Scientific Visualization with Blender course☆21Updated this week
- A Framework for Database Accelerated Quantum Chemistry☆11Jul 30, 2024Updated 2 years ago
- Efficient Sampling of PROTAC-Induced Ternary Complexes☆20Jun 3, 2025Updated last year
- ☆57Updated this week
- Python package for virtual screening of generated molecules using autodock-vina and tensorflow☆14Mar 22, 2021Updated 5 years ago