MNoichl / UMAP-examples-mammothLinks
The mammoth-dataset, a commonly used example for dimensionality reduction techniques.
☆42Updated 2 months ago
Alternatives and similar repositories for UMAP-examples-mammoth
Users that are interested in UMAP-examples-mammoth are comparing it to the libraries listed below
Sorting:
- Testing if UMAP/tSNE overfit their intrinsic dimensionality☆16Updated 2 years ago
- The starter repository for submissions to the GeneDisco challenge for optimized experimental design in genetic perturbation experiments.☆24Updated 3 years ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆25Updated 9 months ago
- ☆24Updated 4 years ago
- Probabilistic Graphical Models in Python3.☆25Updated 7 months ago
- All code necessary for reconstructing Bonsai-trees on high-dimensional data and visualizing them in Bonsai-scout☆83Updated last month
- Fast embedding ot multidimensional datasets, great for cytometry data☆26Updated 11 months ago
- Starter repository for submissions to the CausalBench challenge for gene-gene graph inference from genetic perturbation experiments.☆32Updated 2 years ago
- ☆36Updated last year
- Systematically learn and evaluate manifolds from high-dimensional data☆104Updated 2 months ago
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆31Updated 3 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Updated 2 years ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 9 months ago
- A spectral method for assessing and combining multiple data visualizations☆50Updated 2 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆41Updated 9 months ago
- ☆61Updated last year
- External repo for the EFAAR benchmarking paper☆25Updated 2 weeks ago
- Web interface for browsing, search and filtering recent biorxiv submissions☆14Updated 8 years ago
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated 3 weeks ago
- ☆19Updated 2 years ago
- C++ Accelerated Python Diffusion Maps Library☆23Updated 7 years ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆31Updated 3 years ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆22Updated 3 weeks ago
- Library for diffusion maps☆47Updated 4 years ago
- Distance-based Analysis of DAta-manifolds in python☆138Updated last month
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆71Updated 3 months ago
- Algorithmically create or extend categorical colour palettes☆227Updated 2 months ago
- ☆63Updated 2 years ago
- Multi-Scale Integrated Cell☆36Updated 3 years ago
- ☆36Updated 6 years ago