LABIOQUIM / visualdynamicsLinks
Web Platform made with Python and NextJS for automating GROMACS simulations
☆36Updated 2 weeks ago
Alternatives and similar repositories for visualdynamics
Users that are interested in visualdynamics are comparing it to the libraries listed below
Sorting:
- Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…☆62Updated last week
- ASGARD is a tool that allows via an automated MD workflow to perform MD protein or protein-ligand complex analysis and to generate the co…☆18Updated last year
- ☆21Updated 11 months ago
- model builder for molecular dynamics simulations☆16Updated 2 years ago
- Fully automated high-throughput MD pipeline☆84Updated 2 months ago
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆54Updated 3 months ago
- Academic license pre-required. While FEP Plus charge you 100,000 USD per year. Here comes the FEP-Minus, it is a Schrodinger FEP Plus ide…☆23Updated last year
- PyL3dMD: Python LAMMPS 3D Molecular Descriptors Package☆31Updated last year
- Fully automated docking pipeline (can be run in distributed environments)☆53Updated 2 weeks ago
- Analysis of non-covalent interactions in MD trajectories☆65Updated 10 months ago
- MDverse web scrapper 🔎🔧📄☆15Updated last week
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆72Updated last month
- Input files for GROMACS tutorials written for the Journal of Physical Chemistry B☆23Updated last year
- ☆63Updated this week
- Cloud-based Drug Binding Structure Prediction☆43Updated 2 weeks ago
- Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by …☆28Updated 3 months ago
- Molecular Library Toolbox☆62Updated 2 months ago
- A Python program for QM/MM Simulations based on the Perturbed Matrix Method☆26Updated 2 years ago
- A collections of scripts for working molecular dynamics simulations☆44Updated 3 months ago
- ☆18Updated 4 years ago
- Computational Chemistry Workflows☆56Updated 3 years ago
- ☆40Updated 2 years ago
- ☆17Updated 4 months ago
- ☆28Updated 6 months ago
- Tool suite for analysing molecular dynamics trajectories using network analysis and PRS☆52Updated 6 months ago
- mdml: Deep Learning for Molecular Simulations☆47Updated 6 months ago
- Cryptic pocket prediction using AlphaFold 2☆24Updated 3 years ago
- Building and analyzing residue interaction networks with cofactors (includes tutorial).☆17Updated 4 years ago
- ☆16Updated last year
- mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data☆36Updated this week