Alternatives and similar repositories for Anima-Public

Users that are interested in Anima-Public are comparing it to the libraries listed below

• marksgraham / DW-POSSUM

  View on GitHub
  Simulate realistic diffusion-weighted MR data
  ☆19Mar 2, 2023Updated 2 years ago
• DevelopingHCP / structural-pipeline

  View on GitHub
  dHCP structural pipeline
  ☆15Jul 13, 2021Updated 4 years ago
• frankyeh / TIPL

  View on GitHub
  template image processing library
  ☆23Updated this week
• InsightSoftwareConsortium / ITKAnisotropicDiffusionLBR

  View on GitHub
  Smoothing while preserving edges and coherent structures in images with anisotropic diffusion using lattice basis reduction
  ☆10Nov 12, 2025Updated 3 months ago
• XiaodanXing / SAM4organoid

  View on GitHub
  The github repository for our paper SegmentAnything helps microscopy images based automatic and quantitative organoid detection and analy…
  ☆12Sep 7, 2023Updated 2 years ago
• remmi-toolbox / remmi-matlab

  View on GitHub
  Matlab toolbox to reconstruct and process MRI data
  ☆14Jan 30, 2023Updated 3 years ago
• kslav / cdr_mri

  View on GitHub
  This is the code corresponding to our publication introducing ConvDecoder with physics-based regularization (CD+r) for MRI
  ☆10Feb 6, 2026Updated last week
• tractor / tractor

  View on GitHub
  Magnetic resonance imaging and tractography with R
  ☆30Oct 24, 2025Updated 3 months ago
• dmritrekker / trekker

  View on GitHub
  dMRI based fiber tracking using parallel transport tractography
  ☆28Dec 19, 2025Updated last month
• kamesy / QSM.jl

  View on GitHub
  Julia toolbox for Quantitative Susceptibility Mapping
  ☆16Feb 15, 2024Updated 2 years ago
• jingyunc / wmhs

  View on GitHub
  Automated subdivision of white matter hyperintensities
  ☆12Jan 3, 2022Updated 4 years ago
• CAIsr / qsm

  View on GitHub
  This docker and singularity image bundles the tgv-qsm algorithm with bet2, dcm2niix and provides a complete QSM processing pipeline.
  ☆10Mar 10, 2022Updated 3 years ago
• BAMMri / MyoQMRI

  View on GitHub
  Quantitative methods for muscle MRI
  ☆12Dec 8, 2025Updated 2 months ago
• gbook / nidb

  View on GitHub
  NeuroInformatics Database
  ☆30Updated this week
• andersonwinkler / PALM

  View on GitHub
  PALM: Permutation Analysis of Linear Models
  ☆80Dec 20, 2025Updated last month
• muschellij2 / high_res_ct_template

  View on GitHub
  High Resolution CT Template Paper and Images
  ☆17Sep 25, 2024Updated last year
• neurodebian / freesurfer

  View on GitHub
  Not-yet-official git/annex FreeSurfer repository (https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/repo/freesurfer.git) + debian-sl…
  ☆10May 30, 2017Updated 8 years ago
• mr-jaemin / ge-mri

  View on GitHub
  GE HealthCare MRI research
  ☆17Jun 30, 2025Updated 7 months ago
• ExploreASL / ExploreASL

  View on GitHub
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆58Updated this week
• niivue / niivue-vscode

  View on GitHub
  NiiVue extension for vscode + standalone web app
  ☆42Updated this week
• ntustison / ANTsRNetExamples

  View on GitHub
  That’s what I do: I drink and I know things.
  ☆13Sep 24, 2019Updated 6 years ago
• bkainz / fetalReconstruction

  View on GitHub
  GPU accelerated source code for motion compensation of multi-stack MRI data
  ☆63Jan 7, 2020Updated 6 years ago
• Diffusion-MRI / awesome-preclinical-diffusion-mri

  View on GitHub
  ☆18Feb 6, 2026Updated last week
• MarcCote / tractconverter

  View on GitHub
  Converter for different neuro-imaging file formats.
  ☆19Oct 29, 2017Updated 8 years ago
• hMRI-group / hMRI-toolbox

  View on GitHub
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆77Feb 2, 2026Updated last week
• nipreps / eddymotion

  View on GitHub
  Open-source eddy-current and head-motion correction for dMRI.
  ☆19Jan 27, 2025Updated last year
• InsightSoftwareConsortium / ITKVtkGlue

  View on GitHub
  This module contains classes that bridge ITK image processing and VTK visualization pipelines.
  ☆16Jun 27, 2025Updated 7 months ago
• Entodi / MeshNet

  View on GitHub
  Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940
  ☆16Mar 22, 2018Updated 7 years ago
• InstitutoDOr / FriendENGINE

  View on GitHub
  FRIEND engine is a new implementation of the FRIEND software, a fMRI neurofeedback processing package, already available on the NITRC re…
  ☆15Aug 19, 2019Updated 6 years ago
• lamyj / mrsd

  View on GitHub
  A toolkit to generate MR sequence diagrams
  ☆15Mar 16, 2023Updated 2 years ago
• benoitberanger / niix2bids

  View on GitHub
  Automatic BIDS architecture
  ☆15Sep 2, 2024Updated last year
• muschellij2 / fslr

  View on GitHub
  FSL-R Interface package
  ☆44Sep 9, 2025Updated 5 months ago
• liangfu / bet2

  View on GitHub
  standalone Brain Extraction Tool (bet2), released by
  ☆20Dec 23, 2015Updated 10 years ago
• cookpa / pipedream

  View on GitHub
  PipeDream - open source neuroimaging pipelines
  ☆17Aug 29, 2019Updated 6 years ago
• nnikniL / Sharpness

  View on GitHub
  Image Quality Assessment of Sharpness
  ☆19Oct 19, 2024Updated last year
• Deep-MI / BrainPrint-legacy

  View on GitHub
  Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)
  ☆21Feb 3, 2021Updated 5 years ago
• NIRALUser / DTIPrep

  View on GitHub
  DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation
  ☆19Mar 9, 2021Updated 4 years ago
• MAI-Lab-West-China-Hospital / LaMIM

  View on GitHub
  Large Medical Image Foundation Model
  ☆17Nov 8, 2023Updated 2 years ago
• QSMxT / QSMxT

  View on GitHub
  QSMxT is an end-to-end software toolbox for Quantitative Susceptibility Mapping.
  ☆56Updated this week