These are the input files for MD simulation in Gromacs 5.0+
☆14Apr 10, 2023Updated 3 years ago
Alternatives and similar repositories for MD-simulation-files
Users that are interested in MD-simulation-files are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quantum Chemistry Teaching Labs and Exercises☆11Aug 16, 2022Updated 3 years ago
- Tools, tutorials, and wiki for GROMACS☆21Jul 21, 2020Updated 6 years ago
- A repository for tutorials and FAQ's about LigParGen☆25Aug 12, 2018Updated 7 years ago
- Script to check required packages for Schrödinger suite on Linux machine☆12Jun 18, 2026Updated last month
- Algorithms to analyze and predict molecular structures☆25Jul 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14Jun 23, 2026Updated last month
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Jun 10, 2026Updated last month
- ☆12May 3, 2025Updated last year
- Learning free energy landscapes using artificial neural networks☆15Nov 30, 2017Updated 8 years ago
- ☆13May 26, 2022Updated 4 years ago
- Program to calculate SDPs using Noisy intermediate scale quantum (NISQ) computers.☆12Feb 3, 2025Updated last year
- From metagenomes to epitopes and beyond☆12Apr 30, 2026Updated 2 months ago
- Code for "Evidence of Learned Look-Ahead in a Chess-Playing Neural Network"☆31Jun 4, 2024Updated 2 years ago
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆14Mar 19, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Some tutorials to help people learn how to program the D-Wave quantum computer.☆13Oct 4, 2018Updated 7 years ago
- Tools to calculate descriptors from molecular dynamics and it's application to predict drug resistance.☆15Feb 20, 2023Updated 3 years ago
- The LoCoHD metric for protein-protein structure comparison☆15Oct 1, 2025Updated 9 months ago
- An eigenmode solver for open electromagnetic resonantors☆36Dec 2, 2019Updated 6 years ago
- Data and script of Umbrella Sampling for molecular transmembrane☆14Jun 21, 2024Updated 2 years ago
- ☆17Sep 26, 2025Updated 9 months ago
- ☆10Feb 25, 2021Updated 5 years ago
- ☆13Feb 7, 2023Updated 3 years ago
- ☆12Mar 26, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Comparative Metatranscriptomics Workflow☆10Jul 9, 2020Updated 6 years ago
- Python scripts to convert CGenFF stream files to GROMACS format☆53Apr 27, 2026Updated 2 months ago
- Assorted Python Scripts to accompany the gmx analysis tools☆12Jul 16, 2019Updated 7 years ago
- Tree Search Molecular Dynamics Simulation☆11Aug 25, 2019Updated 6 years ago
- Modelling protein conformations with Alphafold3☆16Jun 11, 2026Updated last month
- Customer workshop materials☆19May 13, 2026Updated 2 months ago
- Code for the paper "Resource-efficient quantum algorithm for protein folding"☆16Jun 23, 2025Updated last year
- Data files for the molecular modelling course☆13Jan 26, 2024Updated 2 years ago
- Implementation Bilinear CNN in tensorflow V2.4.☆11May 12, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Learning Protein-Ligand Properties with Atomic Environment Vectors☆10Apr 19, 2024Updated 2 years ago
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 2 years ago
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆20Jul 11, 2024Updated 2 years ago
- running real time style net and CycleGAN in pyqt!☆14Feb 7, 2020Updated 6 years ago
- Single-sequence protein-RNA complex structure prediction with biological language models☆18Sep 23, 2025Updated 10 months ago
- ☆18Nov 17, 2025Updated 8 months ago
- ☆20Feb 13, 2026Updated 5 months ago