tylerjereddy / diffusion_analysis_MD_simulationsLinks
Python utility functions for the analysis of diffusion in molecular dynamics simulation trajectories.
☆18Updated 3 years ago
Alternatives and similar repositories for diffusion_analysis_MD_simulations
Users that are interested in diffusion_analysis_MD_simulations are comparing it to the libraries listed below
Sorting:
- Analysis of Molecular Dynamics output in the IPython Notebook☆10Updated 9 years ago
- A simple Lennard-Jones molecular dynamics software☆29Updated last year
- Data files which may be used to test examples accompanying the book "Computer Simulation of Liquids" by Michael P. Allen and Dominic J. T…☆15Updated 8 years ago
- A set of tutorials to introduce new users to the MoSDeF (Molecular Simulation Design Framework) toolkit☆28Updated last year
- Playmol is a(nother) software for building molecular models☆19Updated 2 years ago
- Molecular dynamics and Monte Carlo simulation package for polymeric and molecular liquids☆35Updated 3 years ago
- Coarse-graining library that implements Force-matching☆11Updated 5 years ago
- Non-covalent index plots in molecular systems.☆20Updated 8 years ago
- Python wrapper for packmol molecule packing program☆12Updated 10 years ago
- Database of hand-built OPLS-AA parameters and topologies for 464 molecules. Zip files contains parameter and topologies for OpenMM, Groma…☆36Updated 7 years ago
- Resources for teaching quantum chemistry courses in Bonn☆42Updated 6 months ago
- Python Multiscale Thermochemistry Toolbox (pMuTT)☆47Updated 6 months ago
- This python code creates hybrid MD/MC (NAMD/GOMC) simulations for the NVT, NPT, GCMC, and GEMC-NVT ensembles☆46Updated last week
- Python code for learning Molecular Dynamics simulations☆53Updated 5 years ago
- A force field for the simulation of inorganic-organic interfaces (INTERFACE-CHARMM, INTERFACE-PCFF)☆19Updated last year
- An interactive structure viewer alongside its simulated diffraction pattern☆19Updated last week
- Provides some useful information and the LAMMPS input files to model a polymer-metal interface.☆39Updated 4 years ago
- Python library for advanced atomistic simulations☆23Updated 8 years ago
- Materials, issues and things for the 2018 Workshop and Hackathon☆14Updated 6 months ago
- A framework for conducting polymer reference interaction site model (PRISM) calculations☆45Updated 2 weeks ago
- ☆28Updated 3 years ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆65Updated 2 months ago
- Polymer Self-Consistent Field Theory (C++/CUDA version)☆39Updated last week
- Atomistic Topology Operations in Matlab, scripts for manipulation of molecular dynamics or monte carlo simulation systems☆22Updated 2 months ago
- ARC - Automatic Rate Calculator☆48Updated this week
- Kinetic Monte Carlo with multiple time scales and sensitivity analysis☆28Updated 3 years ago
- Running a molecular simulation with the polarizable force field in LAMMPS☆20Updated 3 years ago
- A set of utilities and pedagogic notebooks for the use of linear and kernel methods in atomistic modeling☆24Updated 2 years ago
- Automated reaction pathway search for gas-phase molecules☆59Updated 2 months ago
- Calculates 3d structure factor and simulated x-ray diffraction pattern from molecular dynamics trajectories☆18Updated 6 years ago