rmsandu / segmentation-eval
Extract and evaluate radiomics for liver cancer tumors from DICOM segmentation masks. Using SimpleITK, PyRadiomics and PyDicom.
☆25Updated 2 years ago
Alternatives and similar repositories for segmentation-eval:
Users that are interested in segmentation-eval are comparing it to the libraries listed below
- This is a complete guide on how to do Pyradiomics based feature extraction and then, build a model to calculate the grade of glioma.☆25Updated 4 years ago
- MRI-based Deep Learning Segmentation and Radiomics of Sarcoma Tumors in Mice☆15Updated 2 years ago
- Workflow for Optimal Radiomics Classification☆74Updated 2 months ago
- Visualization for radiomics feature generated by pyradiomics☆51Updated 4 months ago
- Codes used for the paper "Precise 3D CT-Radiomics for Habitat Computation by Machine Learning in Cancer with Histological and MRI correla…☆26Updated 10 months ago
- 3D-Unet: patched based Pytorch implementation for medical images segmentation☆63Updated 3 years ago
- A repository to develop code for IBSI compliant radiomics applications☆31Updated 3 years ago
- Precision medicine toolbox☆69Updated last year
- Some accessible radiomics datas were provided in this link.☆13Updated 3 years ago
- A UNet for the analysis of perfusion CT imaging in the setting of acute ischemic stroke.☆16Updated 9 months ago
- Paper on Brain Extraction for CT Imaging☆24Updated 6 years ago
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes☆38Updated this week
- This is N4 bias field correction for MRI☆24Updated 6 years ago
- public repository for "Fully Automated Hybrid Network to Predict IDH Mutation Status of Glioma via Deep Learning and Radiomics"☆3Updated 2 years ago
- A module for 3D image augmentations for deep learning, specifically medical images such as CT, MRI.☆27Updated 4 years ago
- ☆33Updated last year
- This repository contains code used to prepare the LUMIERE Glioblastoma dataset.☆21Updated last year
- Radiomics (here mainly means hand-crafted based radiomics) contains data acquire, ROI segmentation, feature extraction, feature selection…☆42Updated 3 years ago
- Folder corresponding to 2017 summer project at MD Anderson Cancer Center.☆12Updated 5 years ago
- Transparent and reproducible medical image processing pipelines in Python.☆46Updated this week
- Docker for running stroke lesion core segmentation☆29Updated 4 years ago
- A deep learning framework for automated analysis of body composition from abdominal CT☆18Updated 11 months ago
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆34Updated last month
- Medical Image Radiomics Processor☆67Updated last month
- This repository contains the code used for the paper "Towards automated brain aneurysm detection in TOF-MRA: open data, weak labels, and …☆31Updated 2 years ago
- Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastix☆51Updated last month
- Deep-learning Radiomics for Classification Modelling☆78Updated 2 years ago
- Standardized Environment for Radiomics Analysis☆25Updated 5 years ago
- Knee Osteoarthritis Analysis with X-ray Images using CNN☆41Updated 3 years ago
- Hand-crafted radiomics and deep learning-based radiomcis features extraction.☆84Updated 2 years ago