recoh / pipeline
☆20Updated 3 years ago
Alternatives and similar repositories for pipeline:
Users that are interested in pipeline are comparing it to the libraries listed below
- a tool to segment the hypothalamus and associated subunits on T1-weighted MRI scans☆25Updated 2 years ago
- LGI: Cortical Shape-Adaptive Local Gyrification Index☆11Updated 4 years ago
- UKBB MRI semantic segmentation for Abdominal Dixon and other modalities☆14Updated last year
- Library for generating images by sampling a GMM conditioned on label maps☆23Updated 10 months ago
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆96Updated 2 months ago
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆33Updated last year
- Automatic sorting of brain MRI scans by scan type☆24Updated last month
- Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastix☆49Updated 2 weeks ago
- Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …☆34Updated 3 years ago
- A project to provide custom sorting and renaming of dicom files☆76Updated 7 months ago
- A deep learning framework for automated analysis of body composition from abdominal CT☆19Updated 8 months ago
- A UNet for the analysis of perfusion CT imaging in the setting of acute ischemic stroke.☆15Updated 6 months ago
- TF2.3 DCE-/DSC-MRI processing code, collected, tested and made available to all.☆36Updated 4 months ago
- Very fast greedy diffeomorphic registration code☆69Updated last week
- This is a tool to quickly preview nifti images on the terminal☆54Updated 2 weeks ago
- A Foundational Keypoint Model for Robust and Flexible Brain MRI Registration☆39Updated 7 months ago
- RadTract: enhanced tractometry with radiomics-based imaging biomarkers for improved predictive modelling.☆11Updated 7 months ago
- Workflow for Optimal Radiomics Classification☆73Updated 3 weeks ago
- LST-AI - Deep Learning Ensemble for Accurate MS Lesion Segmentation☆30Updated 2 months ago
- Self-guided notebook tutorials to help get started with using IDC☆30Updated this week
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes☆37Updated 2 weeks ago
- NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.☆145Updated 3 years ago
- This repository contains code used to prepare the LUMIERE Glioblastoma dataset.☆20Updated last year
- Brain Segmentation with MONAI and Dynamic Unet (nn-unet)☆17Updated 3 weeks ago
- Harmonization of multi-site imaging data with ComBat (Python)☆129Updated last year
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆69Updated 6 months ago
- Standardized Environment for Radiomics Analysis☆25Updated 5 years ago
- ☆27Updated 2 years ago
- Code for implementation of Unlearning Scanner Bias for MRI Harmonisation☆27Updated 3 years ago
- MIRTK based SVR reconstruction☆50Updated 3 months ago