Alternatives and similar repositories for pipeline

Users that are interested in pipeline are comparing it to the libraries listed below

• baiwenjia / ukbb_cardiac
  Some code for processing and analysing UK Biobank cardiac MR images.
  ☆176Updated 2 months ago
• CPBridge / ct_body_composition
  A deep learning framework for automated analysis of body composition from abdominal CT
  ☆18Updated last year
• MStarmans91 / WORC
  Workflow for Optimal Radiomics Classification
  ☆77Updated 2 weeks ago
• AIM-Harvard / DeepCAC
  Fully automatic coronary calcium risk assessment using Deep Learning.
  ☆42Updated 4 years ago
• CCI-Bonn / HD-BET
  Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …
  ☆37Updated 4 years ago
• oncoray / mirp
  Medical Image Radiomics Processor
  ☆69Updated 2 weeks ago
• zhangjingcode / RadiomicsFeatureVisualization
  Visualization for radiomics feature generated by pyradiomics
  ☆54Updated 7 months ago
• ErasmusMC-NeuroOnco / DeepDicomSort
  Automatic sorting of brain MRI scans by scan type
  ☆26Updated 7 months ago
• CCI-Bonn / HD-GLIO-AUTO
  Automated processing of MRI in neuro-oncology (combining HD-BET, image co-registration, and HD-GLIO in one container)
  ☆29Updated 3 years ago
• pieper / dicomsort
  A project to provide custom sorting and renaming of dicom files
  ☆78Updated 3 months ago
• ANTsX / ANTsPyNet
  Pre-trained models and utilities for deep learning on medical images in Python
  ☆231Updated last month
• InsightSoftwareConsortium / ITKElastix
  An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images
  ☆249Updated last month
• pwoznicki / AutoRadiomics
  The easiest tool for experimenting with radiomics features.
  ☆40Updated last year
• SuperElastix / ElastixModelZoo
  Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastix
  ☆51Updated 5 months ago
• viswanath-lab / RadQy
  RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…
  ☆105Updated 3 weeks ago
• pyushkevich / greedy
  Very fast greedy diffeomorphic registration code
  ☆81Updated 3 months ago
• raidionics / Raidionics
  Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes
  ☆42Updated last month
• BBillot / hypothalamus_seg
  a tool to segment the hypothalamus and associated subunits on T1-weighted MRI scans
  ☆26Updated 2 years ago
• Jfortin1 / neuroCombat
  Harmonization of multi-site imaging data with ComBat (Python)
  ☆147Updated 2 years ago
• JulianKlug / PerfusionCT-Net
  A UNet for the analysis of perfusion CT imaging in the setting of acute ischemic stroke.
  ☆16Updated 3 months ago
• calico / ukbb-mri-sseg
  UKBB MRI semantic segmentation for Abdominal Dixon and other modalities
  ☆14Updated last year
• ecalabr / brain_mask
  3D deep convolutional neural network based segmentation and brain masking tool for multi-modal brain imaging
  ☆14Updated 2 years ago
• primakov / precision-medicine-toolbox
  Precision medicine toolbox
  ☆70Updated last year
• MIC-DKFZ / niicat
  This is a tool to quickly preview nifti images on the terminal
  ☆64Updated 6 months ago
• balbasty / cornucopia
  An abundance of augmentation layers
  ☆16Updated last month
• ha-ha-ha-han / UKBiobank_deep_pretrain
  Pretrained neural networks for UK Biobank brain MRI images. SFCN, 3D-ResNet etc.
  ☆157Updated 11 months ago
• ashrafinia / SERA
  Standardized Environment for Radiomics Analysis
  ☆26Updated 6 years ago
• rmsandu / segmentation-eval
  Extract and evaluate radiomics for liver cancer tumors from DICOM segmentation masks. Using SimpleITK, PyRadiomics and PyDicom.
  ☆25Updated this week
• BBillot / lab2im
  Library for generating images by sampling a GMM conditioned on label maps
  ☆27Updated last year
• bhklab / med-imagetools
  Transparent and reproducible medical image processing pipelines in Python.
  ☆49Updated 3 weeks ago