razeineldin / DeepSegLinks
DeepSeg: Deep Neural Network Framework for Automatic Brain Tumor Segmentation using Magnetic Resonance FLAIR Images
☆27Updated 2 years ago
Alternatives and similar repositories for DeepSeg
Users that are interested in DeepSeg are comparing it to the libraries listed below
Sorting:
- [MICCAI'2020 PRIME] Uniformizing Techniques to Process CT scans with 3D CNNs for Tuberculosis Severity Estimation.☆61Updated 2 years ago
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆86Updated 9 months ago
- Robust Brain Extraction Tool for CT Head Images☆46Updated 4 years ago
- Deep learning based skull stripping and FLAIR abnormality segmentation in brain MRI using U-Net☆131Updated 5 years ago
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆83Updated 2 years ago
- 3D-Unet: patched based Pytorch implementation for medical images segmentation☆63Updated 3 years ago
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆36Updated 3 months ago
- Hand-crafted radiomics and deep learning-based radiomcis features extraction.☆85Updated 3 years ago
- We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D U…☆110Updated 4 years ago
- Precision medicine toolbox☆70Updated last year
- ☆80Updated 2 years ago
- A module for 3D image augmentations for deep learning, specifically medical images such as CT, MRI.☆27Updated 4 years ago
- Lung Segmentation UNet model on 3D CT scans☆51Updated 5 years ago
- DICOM RT-Struct to mask☆101Updated last year
- Docker for running stroke lesion core segmentation☆29Updated 4 years ago
- Hierarchical probabilistic 3D U-Net, with attention mechanisms (—𝘈𝘵𝘵𝘦𝘯𝘵𝘪𝘰𝘯 𝘜-𝘕𝘦𝘵, 𝘚𝘌𝘙𝘦𝘴𝘕𝘦𝘵) and a nested decoder str…☆43Updated 3 years ago
- Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhanceme…☆204Updated 7 years ago
- Chechink the performance of different augmentation techniques on the BraTS 2020 data.☆24Updated 4 years ago
- COVID-19 Lung Segmentation☆19Updated last year
- Brain Segmentation on MRBrains18☆46Updated 6 years ago
- Model for the detection, segmentation, and classification of prostate lesions from mpMRI, using ProstateX data and Retina U-Net☆68Updated 3 years ago
- A 3D U-Net Based Solution to BraTS 2019 in Keras☆51Updated 5 years ago
- 💥 Command line tool for automatic liver parenchyma and liver vessel segmentation in CT using a pretrained deep learning model☆68Updated 8 months ago
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆73Updated 11 months ago
- Pytorch implementaion of UNet, Deep ResUnet and ONet models for the brain tumor segmentation task☆71Updated 2 years ago
- MRI Brain Tumor Segmentation - BraTS Challenge 2020☆49Updated 4 years ago
- Robust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data☆96Updated 2 years ago
- Multimodal Brain Tumor Segmentation using BraTS 2018 Dataset.☆48Updated 4 years ago
- This Repo Will contain the Preprocessing Code for 3D Medical Imaging☆203Updated 4 years ago
- Acute ischemic stroke dataset☆71Updated last year