Alternatives and similar repositories for covid19uk

Users that are interested in covid19uk are comparing it to the libraries listed below

• CDCgov / PyRenew
  Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.
  ☆16Updated last week
• charlesm93 / disease_transmission_workflow
  Supplementary code for paper "Bayesian workflow for disease transmission model".
  ☆27Updated 4 years ago
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• flatironinstitute / mcmc-monitor
  Monitor MCMC runs in the browser
  ☆36Updated last year
• syclik / stan-algorithms
  Reimplementation of Stan algorithms
  ☆19Updated 3 years ago
• ImperialCollegeLondon / epidemia
  epidemia package
  ☆48Updated 3 years ago
• rgiordan / StanSensitivity
  Tools for automatically generating local sensitivity measures in Stan.
  ☆36Updated 4 years ago
• akira-endo / COVID19_clustersize
  Analysis of COVID-19 transmission using cluster size distribution
  ☆11Updated 3 years ago
• LedgerInvesting / bayesblend
  Easily combine predictions from multiple Bayesian models using techniques including (pseudo) Bayesian model averaging, hierarchical stack…
  ☆34Updated 7 months ago
• JuanLopezMartin / MRPCaseStudy
  An introduction to Multilevel Modeling and Poststratification (MRP) and some of its extensions.
  ☆38Updated 3 years ago
• seabbs / idmodelr
  Infectious disease model library and utilities
  ☆14Updated 2 years ago
• spinkney / helpful_stan_functions
  ☆76Updated last year
• mike-lawrence / aria
  An R package implementing an idiosyncratic Stan workflow
  ☆14Updated 2 years ago
• shedding-hub / shedding-hub
  Data and statistical models for biomarker shedding.
  ☆13Updated 3 weeks ago
• akira-endo / Intro-PMCMC
  Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.
  ☆12Updated 2 years ago
• to-mi / stan-survival-shrinkage
  Bayesian linear survival analysis with shrinkage priors in Stan
  ☆24Updated 9 years ago
• rmcelreath / cmdstan_map_rect_tutorial
  Beginner tutorial for using cmdstan with multithreading
  ☆62Updated 5 years ago
• ssp3nc3r / rethinking
  Examples from McElreath's Statistical Rethinking, First edition coded in Stan.
  ☆50Updated 6 years ago
• rok-cesnovar / stan-distributions
  A web app to visualize distributions in Stan. Uses Stan Math C++ compiled to Webassembly to evaluate the functions using actual Stan impl…
  ☆44Updated 2 years ago
• martinmodrak / modelling-in-stan-2024
  Materials for the course on Bayesian model building run at Second Faculty of Medicine at Charles University in Prague
  ☆11Updated last year
• vcbradley / ddc-vaccine-US
  Repo for code for "Unrepresentative Surveys Significantly Overestimate Vaccine Uptake in the US"
  ☆14Updated 3 years ago
• charlesm93 / StanCon2020
  Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"
  ☆13Updated 3 years ago
• andrjohns / StanEstimators
  Estimate Parameters for Arbitrary R Functions using 'Stan'
  ☆26Updated 2 weeks ago
• bob-carpenter / case-studies
  Case studies in applied and computational statistics.
  ☆38Updated last month
• adamhaber / pybrms
  Pythonic interface to R's brms
  ☆45Updated 3 years ago
• epiforecasts / scoringutils
  Utilities for Scoring and Assessing Predictions
  ☆53Updated this week
• nfidd / nfidd
  Course on nowcasting and forecasting of infectious disease dynamics
  ☆19Updated this week
• nicsteyn2 / NZWastewaterModelling
  ☆10Updated 8 months ago
• CDCgov / cfa-viral-lineage-model
  ☆11Updated last week
• skdeshpande91 / flexBART
  Towards a more flexible BART
  ☆22Updated last week