Alternatives and similar repositories for suffix-tree:

Users that are interested in suffix-tree are comparing it to the libraries listed below

• realead / cykhash
  cython wrapper for khash
  ☆28Updated 7 months ago
• QratorLabs / pysdsl
  Python bindings to Succinct Data Structure Library 2.0
  ☆30Updated 5 years ago
• fnl / patricia-trie
  a pure-Python PATRICIA trie implementation.
  ☆31Updated 10 years ago
• explosion / preshed
  💥 Cython hash tables that assume keys are pre-hashed
  ☆82Updated this week
• robbmcleod / cpufeature
  Python module for detection of CPU features
  ☆28Updated last year
• pycompression / xopen
  Open compressed files in Python
  ☆69Updated 7 months ago
• searchivarius / PyFastPFor
  Python bindings for the fast integer compression library FastPFor.
  ☆56Updated last year
• ptrus / suffix-trees
  Python implementation of Suffix Trees and Generalized Suffix Trees.
  ☆125Updated 4 years ago
• richmilne / JaroWinkler
  Original, standard and customisable versions of the Jaro-Winkler functions.
  ☆32Updated 2 years ago
• biocore-ntnu / kerneltree
  Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.
  ☆25Updated 5 years ago
• kylessmith / ailist
  Augmented Interval Tree implemented in Cython/C
  ☆19Updated 8 months ago
• barrust / pyprobables
  Probabilistic data structures in python http://pyprobables.readthedocs.io/en/latest/index.html
  ☆112Updated 3 weeks ago
• pycompression / python-isal
  Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.
  ☆48Updated last week
• fujimotos / TinyFastSS
  An index data structure for approximate string search.
  ☆23Updated 5 years ago
• fujimotos / polyleven
  Fast Levenshtein Distance Library for Python 3
  ☆82Updated 2 years ago
• dask / zict
  Useful Mutable Mappings
  ☆69Updated last year
• cartoonist / pystream-protobuf
  Python implementation of stream library for streaming google protocol buffer objects
  ☆42Updated last year
• smosanu / trie-python-graphviz
  This is an Object Oriented implementation of a Trie in python. The class contains setter and getter methods, and implements several usefu…
  ☆14Updated 7 years ago
• pudo / banal
  Commons of stupid, simple Python micro functions. Pull requests very welcome.
  ☆19Updated 2 years ago
• IntuitionEngineeringTeam / RedBlackPy
  Fast and Scalable Data Structures for Scientific and Quantitative Research.
  ☆12Updated 6 years ago
• ddelange / retrie
  Efficient Trie-based regex unions for blacklist/whitelist filtering and one-pass mapping-based string replacing
  ☆68Updated 2 weeks ago
• pyranges / ncls
  The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.
  ☆217Updated 4 months ago
• dnanhkhoa / simple-bloom-filter
  A simple implementation of Bloom Filter and Scalable Bloom Filter for Python 3.
  ☆17Updated 6 years ago
• mmihaltz / pysettrie
  python3 package supporting efficient storage and querying of sets of sets using the trie data structure. Supports finding all the superse…
  ☆24Updated last year
• eriknw / cytoolz
  Cython implementation of Toolz. Please use: https://github.com/pytoolz/cytoolz
  ☆39Updated last month
• lgautier / mashing-pumpkins
  Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.
  ☆21Updated last month
• LanguageMachines / LuigiNLP
  A workflow system for Natural Language Processing.
  ☆21Updated 5 years ago
• puffinn / puffinn
  Parameterless and Universal FInding of Nearest Neighbors
  ☆57Updated 8 months ago
• onecodex / taxonomy
  Python and Rust library for loading, saving, and manipulating taxonomic trees
  ☆36Updated 2 months ago