beamform / pacmap-rsLinks
Pairwise Controlled Manifold Approximation (PaCMAP) for dimensionality reduction
☆16Updated last month
Alternatives and similar repositories for pacmap-rs
Users that are interested in pacmap-rs are comparing it to the libraries listed below
Sorting:
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆30Updated 5 months ago
- Code repository for the NeurIPS 2024 paper "Navigating the Effect of Parametrization for Dimensionality Reduction".☆38Updated 9 months ago
- Exon is an OLAP query engine specifically for biology and life science applications.☆70Updated 7 months ago
- Hardware go brrr bounded context suffix array construction algorithm☆18Updated 2 years ago
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆57Updated 5 years ago
- DuckDB Extension for working with bioinformatic data.☆18Updated 2 years ago
- C++ port of the UMAP algorithm☆68Updated last week
- Analyzes whole genome sequencing data for gene-editing verification☆10Updated 3 weeks ago
- ☆20Updated 5 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 6 years ago
- ☆15Updated 2 years ago
- Tokenizers and Machine Learning Models for biological sequence data☆25Updated last year
- examples of using slurm in life sciences workflows using posix file systems and object storage☆41Updated last year
- ProbMinHash – A Class of Locality-Sensitive Hash Algorithms for the (Probability) Jaccard Similarity☆44Updated 5 years ago
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Updated 7 months ago
- Fast and memory-efficient clustering + coreset construction, including fast distance kernels for Bregman and f-divergences.☆34Updated 2 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated last year
- GPU-Parallelized UMAP☆52Updated 6 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆82Updated last year
- Calculation of euclidean distance between vectors, with SIMD☆11Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Updated 5 years ago
- Read and write tensorboard data using Rust☆23Updated last year
- DartMinHash: Fast Sketching for Weighted Sets☆12Updated 4 years ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆38Updated 2 months ago
- Fast and explainable clustering in Python☆120Updated last week
- DuckDB Extension for reading and writing FASTA and FASTQ Files☆21Updated 2 years ago
- Genomics datastructures using Apache Arrow☆20Updated 4 years ago
- Genie: Fast and Robust Hierarchical Clustering with Noise Point Detection - in Python and R☆67Updated last week
- C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings☆155Updated last year
- A high efficiency binary format for sequencing data☆77Updated last month