BME1478H / Fall2022class
☆37Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Fall2022class
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 9 years ago
- COmmon COordinate FRAMEwork in R☆36Updated 4 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Updated 9 years ago
- ☆14Updated last year
- A system for building mouse brain atlas from histology series☆11Updated 4 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 3 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 3 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆86Updated 3 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆15Updated 3 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆51Updated 4 years ago
- Developing a Brain Atlas through Deep Learning☆51Updated last year
- Automated 3D brain registration with support for multiple species and atlases.☆123Updated last week
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆24Updated 3 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆20Updated 2 years ago
- Histology processing☆64Updated 8 months ago
- That’s what I do: I drink and I know things.☆13Updated 5 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆83Updated this week
- Code for analyzing multi-electrode array recordings (spikes & LFP) for Trujillo, Gao, Negraes et al., 2019.☆15Updated 4 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated 11 months ago
- Tools to work with Allen Inst CCF data in matlab☆124Updated 8 months ago
- ☆18Updated 2 years ago
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆69Updated 5 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆48Updated last week
- A GUI and library for doing multi-fiber photometry☆17Updated 7 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated this week
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆60Updated 5 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆15Updated 8 months ago
- The ImageJ framework for quantification of neuronal anatomy☆42Updated this week
- GWAS Summary Statistics for Brain Imaging Phenotypes☆19Updated 3 years ago
- ☆28Updated last year