AlessandroMinervini / Convolutional-Generative-Stochastic-Network-for-Protein-Secondary-Structure-PredictionView on GitHub
An implementation for Deep Supervised and Convolutional Generative Stochastic Network for Protein Secondary Structure Prediction, https://arxiv.org/abs/1403.1347
☆15Dec 17, 2019Updated 6 years ago
Alternatives and similar repositories for Convolutional-Generative-Stochastic-Network-for-Protein-Secondary-Structure-Prediction
Users that are interested in Convolutional-Generative-Stochastic-Network-for-Protein-Secondary-Structure-Prediction are comparing it to the libraries listed below
Sorting:
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 2 years ago
- Atomic Charge Calculator III (ACC III) is an application for fast calculation of partial atomic charges.☆16Mar 1, 2026Updated last week
- We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict …☆16Mar 29, 2023Updated 2 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- Protein Secondary Structure predictor using Convolutional Neural Networks☆113Dec 9, 2025Updated 2 months ago
- Learning protein representation for rigid-body docking☆22Nov 2, 2019Updated 6 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆21Jan 15, 2024Updated 2 years ago
- Implementation of High Quality Protein Q8 Secondary Structure Prediction by Diverse Neural Network Architectures☆22May 9, 2019Updated 6 years ago
- Next-generation sequencing analysis pipelines & scrips☆10Nov 25, 2020Updated 5 years ago
- Source code for ICLR 2021 paper: "Molecule Optimization by Explainable Evolution"☆30May 29, 2021Updated 4 years ago
- Features Based Conformational Clustering of MD trajectories. See details at:☆10Nov 20, 2025Updated 3 months ago
- Autoencoder network for learning a continuous representation of molecular structures.☆28Nov 20, 2016Updated 9 years ago
- ☆15Jun 30, 2025Updated 8 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- (differentiable) gradient-based optimization on a chemical graph for de novo molecule design/optimization (ICLR 2022)☆31Jul 17, 2023Updated 2 years ago
- Prior Sampling for high dimension data with domain knowledge.☆10Jan 11, 2022Updated 4 years ago
- gmx_corr converts the covariance matrix which is produced by GROMACS covar to cross correlation matrix and creates a heat map figure.☆11Oct 11, 2022Updated 3 years ago
- The Density Functional Theory for Electrolyte Solutions☆10Sep 13, 2022Updated 3 years ago
- Developing a Deep learning classification-based model for screening pharmaceutical compounds with hERG inhibitory activity (cardiotoxicit…☆14Oct 2, 2024Updated last year
- ☆10Dec 9, 2022Updated 3 years ago
- AI for a cure, a combination of Latent-GAN and VAE-JTNN to create 100% valid drug like molecules☆10Mar 16, 2020Updated 5 years ago
- Icarogw is a pure python package to estimate population properties of noisy observations in presence of selection biases. The code is mos…☆16Sep 10, 2025Updated 5 months ago
- Modelling of Large Protein Complexes☆39Aug 8, 2025Updated 7 months ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- Codes to compute the WDM wavelet transform☆11Oct 20, 2020Updated 5 years ago
- Gravitational wave interferometer parameter optimisation game, written in Python and run in a Jupyter notebook.☆10Dec 18, 2018Updated 7 years ago
- [MLHC 2021] Model Selection for Offline RL: Practical Considerations for Healthcare Settings. https://arxiv.org/abs/2107.11003☆10Oct 6, 2022Updated 3 years ago
- Deep learning for gravitational potentials, based on well-mixed tracers in phase space.☆11Dec 29, 2025Updated 2 months ago
- KENN - A Transformer Encoder for Gravitational Waves☆11Sep 29, 2025Updated 5 months ago
- It's yet another static site generator. Have you seen jekyll? hyde? Yup. Like those.☆49Aug 24, 2021Updated 4 years ago
- Subplex Optimization Algorithm☆11Nov 25, 2025Updated 3 months ago
- rim provides an interface to Maxima for R. Maxima is a powerful and fairly complete computer algebra system.☆11Nov 25, 2025Updated 3 months ago
- E(3) equivariant graph neural network for PPI site prediction☆10Sep 18, 2023Updated 2 years ago
- Python implementation of various 2D and 3D compactness measures.☆10Aug 17, 2022Updated 3 years ago
- Phylogenetic analyses code☆10Feb 12, 2020Updated 6 years ago
- An algorithm that carries out both large-loop and small-loop TEM modeling.☆11Jan 4, 2022Updated 4 years ago
- Gromacs molecular dynamics simulation analysis scripts☆10Apr 5, 2022Updated 3 years ago
- Tutorial for the usage of the dcTMD approach and Langevin simulations employing the trypsin-benzamidine complex as example.☆11Jul 15, 2024Updated last year
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Dec 11, 2021Updated 4 years ago