Molecular visualization for MDAnalysis with MolecularNodes in Blender
☆21Mar 30, 2025Updated last year
Alternatives and similar repositories for ggmolvis
Users that are interested in ggmolvis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tutorials on doing AMBER based Metadynamics and Gaussian Accelerated MD (GaMD)☆12Dec 1, 2025Updated 5 months ago
- Blender extension exposing a jupyter kernel within Blender.☆27Sep 17, 2025Updated 8 months ago
- Helper function for Markov State Models☆11Jun 25, 2024Updated last year
- PyChem-Pro: a molecular viewer, cheminformatics library, molecular descriptor calculator, molecular editor, chemical drawing editor, and …☆165Updated this week
- Xlink is a Python script that uses Gromacs to automatically perfom simulation crosslinking and generate atomistic model of aromatic polya…☆16Jul 8, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- Generative backmapping of coarse-grained molecular systems using an equivariant graph neural network and flow-matching☆12Sep 17, 2025Updated 8 months ago
- Convenience functions for VMD-TCL scripting☆14Apr 3, 2026Updated last month
- This repo is deprecated. I move the work to support molstar in nglview: https://github.com/nglviewer/nglview☆12Dec 3, 2024Updated last year
- Tools for coarse-grained molecular dynamics simulations using the SPICA force field☆13May 12, 2026Updated 2 weeks ago
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆14Apr 24, 2024Updated 2 years ago
- ☆49Apr 14, 2026Updated last month
- ☆13Apr 1, 2026Updated last month
- ☆25Feb 28, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Python library for constructing polymer topologies and coordinates☆22Sep 23, 2025Updated 8 months ago
- ☆16May 11, 2016Updated 10 years ago
- The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri …☆17Nov 27, 2025Updated 6 months ago
- "One general law, leading to the advancement of all organic beings, namely, multiply, vary, let the strongest live and the weakest die." …☆15Nov 18, 2020Updated 5 years ago
- ☆13Jul 17, 2025Updated 10 months ago
- EC-Conf: An Ultra-fast Diffusion Model for Molecular conformation Generation with Equivariant Consistency☆12Mar 28, 2024Updated 2 years ago
- AIMNet2: Fast, accurate and transferable neural network interatomic potential☆18Oct 17, 2024Updated last year
- Deep Boosted Molecular Dynamics☆13Aug 27, 2024Updated last year
- protein conformational spaces meet machine learning☆53Mar 26, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Run OpenMM with forces provided by any Python program☆40Dec 25, 2024Updated last year
- Automatic generation of LAMMPS data file for atomistic and coarse-grained simulations of molecular and polymeric materials with various t…☆20Mar 24, 2026Updated 2 months ago
- ☆15Jun 26, 2018Updated 7 years ago
- Unified Free Energy Dynamics (UFED) simulations with OpenMM☆35Aug 20, 2025Updated 9 months ago
- Tools to add restraints to FEP runs. Includes a workflow to determine reference structures and restraint widths from plain MD simulations…☆12Mar 12, 2026Updated 2 months ago
- RESP with inter- and intra-molecular constraints in Psi4.☆32May 26, 2023Updated 3 years ago
- ☆23Apr 20, 2025Updated last year
- Perform polymerization and crosslinking in MARTINI coarse-grained forcefield using GROMACS MD package☆29Jan 21, 2026Updated 4 months ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆14Apr 23, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Temperature generator for Replica Exchange MD simulations☆30Dec 14, 2022Updated 3 years ago
- GUI for running simulations with universal MLIPs (MACE, CHGNet, SevenNet, Nequix, ORB, MatterSim, UPET, GRACE)☆37May 21, 2026Updated last week
- Gromacs topology template generator☆15Jul 15, 2021Updated 4 years ago
- Adaptive sampling algorithms for molecular transitions☆28Apr 10, 2026Updated last month
- Various Ideas for Protein Masked LM with ESMFold/ESM-2☆15Aug 17, 2023Updated 2 years ago
- Conversion of coarsegrain to atomistic (complete rewrite of the original CG2AT)☆36Jul 17, 2024Updated last year
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆23Oct 31, 2025Updated 6 months ago