Alternatives and similar repositories for MOL-Mamba

Users that are interested in MOL-Mamba are comparing it to the libraries listed below

• conghaowang / GLDM
  ☆17Updated 4 months ago
• schwallergroup / mhnn
  Molecular Hypergraph Neural Network
  ☆35Updated 9 months ago
• bowen-gao / ProFSA
  [ICLR 2024] ProFSA: Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment
  ☆11Updated 11 months ago
• Suryanarayanan-Balaji / GPT-MolBERTa
  ☆12Updated last year
• GLAD-RUC / ESTAG
  The source code of "Equivariant Spatio-Temporal Attentive Graph Networks to Simulate Physical Dynamics"
  ☆24Updated 9 months ago
• UnHans / HimGNN
  The official codes and implementations of HimGNN model in paper:"HimGNN:a novel hierarchical molecular representations learning framewor…
  ☆17Updated last year
• 23AIBox / 23AIBox-CSCo-DTA
  ☆13Updated last year
• Rich-XGK / GTMGC
  Implementation of GTMGC: Using Graph Transformer to Predict Molecule’s Ground-State Conformation (ICLR2024 Spotlight).
  ☆17Updated last year
• uta-smile / CD-MVGNN
  ☆14Updated 3 years ago
• yazdanimehdi / FragXsiteDTI
  Drug Target Interaction Prediction Using Protein Binding Sites And Drug Fragments
  ☆11Updated last year
• HICAI-ZJU / iMoLD
  Official implementation for Learning Invariant Molecular Representation in Latent Discrete Space (NeurIPS 2023)
  ☆21Updated last year
• wangzhehyd / fastsmcg
  Data and code required to reach the main conclusions of the fastsmcg paper
  ☆10Updated last year
• BiomedSciAI / r-BRICS
  Revised breaking of retrosynthetically interesting chemical substructures (r-BRICS) – a revised BRICS module based on rdKit that breaks r…
  ☆9Updated 2 months ago
• smiles724 / MROT
  ☆12Updated 2 years ago
• smiles724 / InstructMol
  ☆12Updated last year
• YangLing0818 / IRDiff
  [ICML 2024] Interaction-based Retrieval-augmented Diffusion Models for Protein-specific 3D Molecule Generation
  ☆25Updated 8 months ago
• xianyuco / SS-GNN
  ☆25Updated 2 years ago
• youqingxiaozhua / DeepTernary
  ☆10Updated last month
• zaixizhang / FLAG
  Implementation of ICLR23 paper "Molecule Generation for Target Protein Binding with Structural Motifs"
  ☆66Updated last year
• chao1224 / MoleculeSDE
  A Group Symmetric Stochastic Differential Equation Model for Molecule Multi-modal Pretraining, ICML'23
  ☆31Updated last year
• wyky481l / MMCD
  ☆26Updated 7 months ago
• myprecioushh / ZeroBind
  ☆23Updated last year
• mahsasheikh / DrugGen
  DrugGen: Advancing Drug Discovery with Large Language Models and Reinforcement Learning Feedback
  ☆13Updated last month
• HySonLab / Protein_Pretrain
  Multimodal Pretraining for Unsupervised Protein Representation Learning
  ☆22Updated 9 months ago
• LirongWu / PSC-CPI
  Code for AAAI 2024 paper "PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein In…
  ☆27Updated 3 months ago
• enai4bio / BridgeDPI
  BridgeDPI: A Novel Graph Neural Network for Predicting Drug-Protein Interactions
  ☆19Updated 4 months ago
• Layne-Huang / CoaDTI
  Multi-modal co-attention for drug-target interaction annotation and Its Application to SARS-CoV-2
  ☆17Updated 2 years ago
• HUBioDataLab / ProtBENCH
  ☆12Updated 11 months ago
• Vencent-Won / SGGRL
  The implementation of the paper "Multi-Modal Representation Learning for Molecular Property Prediction: Sequence, Graph, Geometry".
  ☆42Updated 5 months ago
• wuhuaijin / EBMDock
  Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…
  ☆13Updated last year