theochem / goptLinks
Python library for optimizing molecular structures and determining chemical reaction pathways.
☆17Updated last year
Alternatives and similar repositories for gopt
Users that are interested in gopt are comparing it to the libraries listed below
Sorting:
- A collection of interpretive chemical tools for analyzing outputs of the quantum chemistry calculations.☆52Updated last year
- fast functionalisation of molecules☆37Updated 3 years ago
- Atoms-in-molecules density partitioning schemes based on stockholder recipe☆22Updated this week
- AARON (An Automated Reaction Optimizer for New catalysts) automates DFT optimizations of TS structures for asymmetric catalytic reactions…☆16Updated 4 years ago
- NMR Chemical Shifts from Molecular Dynamics Simulation☆13Updated 3 years ago
- Repository for Chemical Perception Sampling Tools☆21Updated last year
- Mindless molecule generator in a Python package.☆38Updated 2 months ago
- Computational Chemistry☆22Updated 2 months ago
- Two algorithms to fragment molecules into specified molecular subunits (e.g. functional groups)☆35Updated 3 years ago
- GNN models and Datasets for Halogen BDEs☆10Updated last year
- autoDIAS: a python tool for an automated Distortion/Interaction Activation Strain Analysis☆17Updated 4 years ago
- Equivariant GNN for the prediction of atomic multipoles up to quadrupoles.☆30Updated 3 years ago
- ☆20Updated 2 years ago
- Perform polymerization and crosslinking in MARTINI coarse-grained forcefield using GROMACS MD package☆24Updated 6 months ago
- Contrastive pretraining to learn chemical reaction representations (RxnRep) for downstream tasks.☆33Updated 3 years ago
- Polarisable force field for ionic liquids☆16Updated 10 months ago
- A simple workflow for minimum energy conformer search based on force field optimization methods (UFF and MMFF94) available from RDKit.☆12Updated 5 years ago
- Partial Charge assignment for Molecular Dynamics☆21Updated last month
- Generate 3D transition state geometries with GNNs☆15Updated 4 years ago
- Python code for Hückel and Pariser-Parr-Pople molecular orbital theory☆15Updated 2 years ago
- Package for reading, analysis and visualization of metadynamics HILLS☆36Updated last year
- Quick Reaction Coordinate using Python☆39Updated last year
- Program package for the quantum mechanical calculation of EI mass spectra using automated reaction network exploration☆19Updated last week
- Molecular Visualization powered by Plotly☆18Updated 3 years ago
- References, presentations and other resources☆15Updated last year
- Data and scripts for comprehensive benchmark of conformer relative energies☆25Updated 5 years ago
- A physical property evaluation toolkit from the Open Forcefield Consortium.☆56Updated last week
- Using quantum chemical computation to find important reactions without requiring human intuition.☆18Updated 7 years ago
- ☆61Updated 2 months ago
- A Python library for constructing polymer topologies and coordinates☆16Updated last month