smart-on-fhir / cumulus-etlLinks
Extract FHIR data, Transform with NLP and DEID tools, and then Load FHIR data into a SQL Database for analysis
☆19Updated this week
Alternatives and similar repositories for cumulus-etl
Users that are interested in cumulus-etl are comparing it to the libraries listed below
Sorting:
- FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…☆71Updated 2 months ago
- A Model Context Protocol implementation for FHIR☆55Updated 3 weeks ago
- MCP Server for EMRs with FHIR☆83Updated 6 months ago
- Conversion from FHIR HL7 to OMOP CDM☆19Updated 8 months ago
- An application to interact with your FHIR API's using natural language query☆15Updated 2 years ago
- Common clinical models in the forms of openEHR archetypes and GDL guidelines☆37Updated this week
- Streamlit template for building SMART on FHIR apps in the Cerner ecosystem.☆10Updated 2 years ago
- Tools that make it easier to use FHIR and clinical terminology within data analytics, built on Apache Spark.☆111Updated this week
- Repository containing the Workflow Manager sub-system part of MONAI Deploy.☆18Updated 6 months ago
- Set of tools for helping with data (in FHIR format) anonymization.☆282Updated last month
- Standardization tool for healthcare data☆54Updated 2 years ago
- This project provides the source for the SQL on FHIR v2.0 Implementation Guide☆121Updated this week
- The missing middleware layer in healthcare AI 💫 🏥☆154Updated last week
- A collection of tools for extracting FHIR resources and analytics services on top of that data.☆196Updated this week
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆51Updated last week
- Connector that loads FHIR r4 USCDIv3 JSON data from local file storage into the Tuva common data model in Snowflake.☆28Updated last week
- HL7 FHIR Based Secure Data Repository☆43Updated last week
- This is an engine that converts data of one structure to another, based on a configuration file which describes how. There is an accompan…☆231Updated 2 weeks ago
- Python utilities for working with FHIR, including libraries to build simple, flat FHIR views in BigQuery.☆92Updated 2 months ago
- A version of MIMIC-IV in FHIR☆47Updated 11 months ago
- An ASGI FHIR API framework built on top of FastAPI and FHIR Resources☆46Updated last month
- FHIR to OMOP using PySpark on AWS Glue☆14Updated 4 years ago
- Tool to view DICOM data served by Google Cloud Healthcare API☆17Updated last month
- FHIR Python Analysis Client and Kit (FHIRPACK) is a general purpose FHIR client that simplifies the access, analysis and representation o…☆48Updated 2 years ago
- Data quality analytics for FHIR exported to BigQuery.☆55Updated 10 months ago
- EMR based on FHIR☆104Updated this week
- Live ETL pipeline to standardize Health Data into FHIR.☆41Updated 3 years ago
- Convert FHIR StructureDefinition into Python type annotations☆21Updated 9 months ago
- Benchmarking Large Language Models for FHIR☆41Updated 2 weeks ago
- ☆85Updated 8 months ago