A C implementation of Ukkonen's suffix tree-building algorithm, with test suite and tree print.
☆22Nov 16, 2014Updated 11 years ago
Alternatives and similar repositories for ukkonen-suffixtree
Users that are interested in ukkonen-suffixtree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A C++ implementation of a Generalized Suffix Tree using Ukkonen's algorithm☆22Jul 11, 2016Updated 9 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- A Self-Hosting LISP to LLVM-IR Compiler☆29Aug 24, 2019Updated 6 years ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 4 months ago
- ☆10May 28, 2023Updated 2 years ago
- Key-value store based on a trie data structure to handle the keyspace.☆12Jun 5, 2019Updated 6 years ago
- MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)☆14Dec 7, 2016Updated 9 years ago
- Lua benchmark suite☆22Feb 6, 2019Updated 7 years ago
- An experiment with modern C++, suffix trees, and Ukkonen's algorithm for suffix tree construction.☆12Mar 15, 2019Updated 7 years ago
- GAMES101 Homework Collection☆10Apr 2, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated 2 years ago
- Provides a template makefile for add quickly a build sytem for your project☆20Apr 19, 2016Updated 9 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Detailed explanation and c++ implementation of DC3 algorithm.☆13Oct 22, 2022Updated 3 years ago
- 写的快糙猛的课程作业(躺☆11May 2, 2020Updated 5 years ago
- Accmut is a framework for acclerating mutation testing, which is based on LLVM-IR.☆10Jan 25, 2018Updated 8 years ago
- some algorithm books in Chinese☆12Sep 29, 2018Updated 7 years ago
- ☆18Feb 24, 2017Updated 9 years ago
- Librería para el consumo de los servicios de SmarterWeb. Soporta Framework 3.5 y 4.5 o superior a través de DLL☆15Mar 6, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- 2D game engine with a modern intuitive API and a decoupled plugin system☆14Mar 23, 2024Updated 2 years ago
- Abstract Message Protocol C implementation☆32Jan 23, 2014Updated 12 years ago
- IPython/Jupiter kernel for Racket and Gamble.☆10May 1, 2018Updated 7 years ago
- ☆13Dec 15, 2020Updated 5 years ago
- A lisp interpreter☆13Oct 1, 2020Updated 5 years ago
- C++20 Generalized Suffix Tree implementation☆13Oct 23, 2022Updated 3 years ago
- A module that extends Lua with a few essential functions☆15Feb 13, 2017Updated 9 years ago
- A Light CodeCounter with Qt C++☆10Jul 24, 2024Updated last year
- A lua binding to the tinycdb library by Michael Tokarev☆21Mar 27, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A simple lightweight library to use Masonry layout in Angular☆10Feb 6, 2019Updated 7 years ago
- Source code repository accompanying the scientific paper "Finding Efficient Spatial Distributions for Massively Instanced 3-d Models" (S.…☆16Apr 16, 2020Updated 5 years ago
- collection of data structures and algorithms☆19Mar 19, 2019Updated 7 years ago
- Vanilla JavaScript interpreter with built-in NO-SQL document database with Btree & ARTful indexing from the database project.☆13Apr 18, 2020Updated 5 years ago
- ☆11Sep 17, 2020Updated 5 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Apr 25, 2018Updated 7 years ago
- An R HTMLWidget for making interactive manhattan plots for GWAS.☆20Aug 1, 2015Updated 10 years ago