rordenlab / i2nii
Convert various image formats to NIfTI.
☆13Updated 2 years ago
Alternatives and similar repositories for i2nii:
Users that are interested in i2nii are comparing it to the libraries listed below
- Simple medical imaging visualization tool designed for NIfTI images. Includes dcm2nii for conversion of DICOM, Philips, and other proprie…☆69Updated 3 years ago
- ☆27Updated 10 months ago
- LST-AI - Deep Learning Ensemble for Accurate MS Lesion Segmentation☆31Updated last week
- GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D…☆109Updated 2 months ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline Version 2☆22Updated this week
- ☆22Updated 2 months ago
- DEPRECATED development has moved to https://github.com/rordenlab/MRIcroGL☆60Updated 4 years ago
- DL+DiReCT - Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation☆26Updated 5 months ago
- Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space☆33Updated 2 years ago
- Bruker ParaVision to NIfTI conversion☆12Updated 4 years ago
- A workflow to allow Freesurfer recon-all to run on brain image with gliomas☆29Updated 9 months ago
- A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data☆63Updated 4 months ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆25Updated last week
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆22Updated 3 years ago
- Resurces for MRI images processing and deep learning in 3D☆135Updated 2 years ago
- Weakly supervised perivascular spaces segmentation with salient guidance of Frangi filter☆13Updated last year
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆49Updated 2 years ago
- Perivascular (PVS) or Virchow–Robin Spaces (VRS) segmentation with a 3D Unet☆27Updated 4 months ago
- mrQ_BoxJoinBox☆22Updated last year
- DICOM to NIfTI conversion, NIfTI tools☆95Updated 7 months ago
- Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps☆69Updated 8 months ago
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆105Updated 3 months ago
- NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations☆31Updated 4 years ago
- A framework for joint super-resolution and image synthesis, without requiring real training data☆157Updated last year
- Bash script to compute DTI-ALPS☆47Updated last month
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆45Updated 3 years ago
- RadTract: enhanced tractometry with radiomics-based imaging biomarkers for improved predictive modelling.☆11Updated 9 months ago
- Python wrapper around MATLAB and SPM12☆10Updated 3 weeks ago
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆64Updated last week
- Purifibre removes spurious streamlines from tractograms☆10Updated 2 years ago