Problem sets for MIT 6.0001 Introduction to Computer Science and Programming in Python, Fall 2016
☆16Aug 2, 2019Updated 7 years ago
Alternatives and similar repositories for MIT-6.0001-Introduction-to-Computer-Science-and-Programming-in-Python
Users that are interested in MIT-6.0001-Introduction-to-Computer-Science-and-Programming-in-Python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 3 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- Effect of tokenization on transformers for biological sequence☆23Dec 31, 2025Updated 8 months ago
- ☆17Jun 2, 2024Updated 2 years ago
- ☆15Apr 10, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Work in progress! I don't recommend looking at the code right now.☆25Aug 9, 2026Updated 3 weeks ago
- For computational analysis of bacterial RNA-seq data☆12Jul 14, 2017Updated 9 years ago
- Beautify the phylogenetic tree using one Excel sheet only☆17Mar 2, 2024Updated 2 years ago
- National Novel Generation Month, 2023 edition.☆27Oct 2, 2024Updated last year
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23May 26, 2026Updated 3 months ago
- Within-species genome-wide dN/dS estimation from very many genomes☆24Oct 26, 2020Updated 5 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- An Interactive Desktop Platform for Drawing Gene Structure and Protein Architecture☆23Aug 8, 2025Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆19Jun 26, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Jan 5, 2026Updated 7 months ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- ML course materials for bioinformatics students following the Basic Machine Learning for Bioinformatics course at Utrecht University. Cou…☆18Feb 27, 2023Updated 3 years ago
- Population analysis PIPEline 🛠🧬☆26Mar 2, 2026Updated 5 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees…☆26Nov 14, 2022Updated 3 years ago
- Automatic evaluation of HGTs☆32Jan 31, 2025Updated last year
- Reconstruct Ancestral State in Phylogenies☆31May 21, 2024Updated 2 years ago
- Development repo for pyani-plus (the next iteration of pyani)☆36Aug 24, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆35Dec 4, 2025Updated 8 months ago
- Pan-Genome Analysis Pipeline☆35Aug 6, 2026Updated 3 weeks ago
- Rapid and scalable homolog identification for bacterial genomes☆33Aug 27, 2019Updated 7 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆41Dec 8, 2022Updated 3 years ago
- A set of scripts for calculating pairwise SNP distance☆45Feb 19, 2026Updated 6 months ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆44Mar 4, 2024Updated 2 years ago
- Conditional Reciprocal Best Blast☆44Mar 22, 2017Updated 9 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.☆44Feb 11, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Micro 612 genomics workshop☆38Apr 23, 2021Updated 5 years ago
- Hitting associations with k-mers☆44May 14, 2022Updated 4 years ago
- Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks☆49Apr 28, 2025Updated last year
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆51Oct 17, 2023Updated 2 years ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆42Apr 17, 2026Updated 4 months ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆45Apr 25, 2024Updated 2 years ago
- Recombination-free trees☆72Jul 24, 2026Updated last month