Rolling Hash C++ Library
☆188Mar 14, 2024Updated 2 years ago
Alternatives and similar repositories for rollinghashcpp
Users that are interested in rollinghashcpp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DartMinHash: Fast Sketching for Weighted Sets☆12Dec 8, 2025Updated 7 months ago
- A tool to find and visualize rearrangements in DNA sequences☆16Sep 16, 2019Updated 6 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 7 months ago
- Self-contained, multi-threaded fasta/q parser☆50Mar 10, 2026Updated 4 months ago
- ☆18Updated this week
- UniqTag: Content-derived unique and stable identifiers for gene annotation☆10May 4, 2015Updated 11 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Apr 19, 2020Updated 6 years ago
- C library to pack and unpack short arrays of integers as fast as possible☆96Mar 11, 2023Updated 3 years ago
- FOundation of stXXl and thriLL☆14Jan 24, 2024Updated 2 years ago
- Vectorized version of the PCG random number generator☆87Jan 9, 2026Updated 6 months ago
- The library handling things related to UTF-8 and Unicode when you want to port your program to Windows☆16Jan 13, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Low memory multithreaded hash table☆24Mar 23, 2015Updated 11 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆14May 11, 2018Updated 8 years ago
- Fast decoder for VByte-compressed integers☆130Jun 7, 2026Updated last month
- An efficient external-memory algorithm for the construction of minimal perfect hash functions☆66May 29, 2024Updated 2 years ago
- A C++ library to compress and intersect sorted lists of integers using SIMD instructions☆446Jun 7, 2026Updated last month
- dynamic-updateable-index☆11Nov 10, 2015Updated 10 years ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆18Oct 3, 2016Updated 9 years ago
- A C/C++ header file for fast 32-bit division remainders (and divisibility tests) on 64-bit hardware.☆350Apr 11, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆21Sep 16, 2016Updated 9 years ago
- A General-Purpose Counting Filter: Counting Quotient Filter☆132Aug 3, 2023Updated 2 years ago
- 🚀 Fast C/C++ bit population count library☆369Updated this week
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆107May 6, 2026Updated 2 months ago
- A Variable-Length String Hashing Library in C++☆46Jul 5, 2019Updated 7 years ago
- A blend of the compact and sparse hash table implementations.☆15Aug 20, 2021Updated 4 years ago
- A ball-tree implementation for K-NN☆18Jan 8, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- haesni is a small hash function using aes-ni for fast string hashing☆19Oct 6, 2018Updated 7 years ago
- C library implementing the ridiculously fast CLHash hashing function☆293May 23, 2026Updated 2 months ago
- The FastPFOR C++ library: Fast integer compression☆972Jun 7, 2026Updated last month
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 4 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 5 months ago
- The esa-matchfinder is a C99 library for efficient Lempel-Ziv factorization using enhanced suffix array (ESA).☆28Sep 2, 2025Updated 10 months ago
- Towards Optimal-Space Minimal Perfect Hashing Beyond Brute-Force☆15Mar 31, 2025Updated last year