kirkegaardlab / deeptangleLinks
[Comms Bio 2023] Official Code for Fast Detection of Slender Bodies in High Density Microoscopy Data
☆40Updated last year
Alternatives and similar repositories for deeptangle
Users that are interested in deeptangle are comparing it to the libraries listed below
Sorting:
- WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans☆53Updated 2 years ago
- A tool to analyze and debug neural networks in pytorch. Use a GUI to traverse the computation graph and view the data from many different…☆293Updated 11 months ago
- Scalable Optical Flow-based Image Montaging and Alignment☆83Updated last week
- Automatic gradient descent☆215Updated 2 years ago
- A napari plugin to process and analyse images with chatGPT!☆281Updated 2 months ago
- A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.☆97Updated 2 months ago
- Repository for WormSwin: Instance segmentation of C. elegans using vision transformer as appeared in Nature Scientific Reports 2023.☆13Updated 2 years ago
- ☆29Updated this week
- Accelerated pose estimation and tracking using semi-supervised learning☆276Updated last week
- Python library for analysis of neuroanatomical data.☆107Updated 2 weeks ago
- Memory mapped numpy arrays of varying shapes☆304Updated last year
- Code behind the work "Single Cortical Neurons as Deep Artificial Neural Networks", published in Neuron 2021☆160Updated 4 years ago
- A repository to house some personal attempts to beat some state-of-the-art for medical datasets☆100Updated 2 years ago
- Segment Anything for Microscopy☆618Updated this week
- A cheap mesoscopic light sheet and optical projection tomography microscope☆13Updated 2 years ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆234Updated 9 months ago
- End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR☆34Updated 3 weeks ago
- DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experime…☆221Updated 2 weeks ago
- ☆45Updated last month
- An experiment with "freely" wired neural networks (no layers)☆164Updated last year
- Symbolic API for model creation in PyTorch.☆68Updated 8 months ago
- 🌈☆66Updated last month
- ☆203Updated 2 years ago
- Cell tracking and segmentation software☆156Updated last week
- The Zebrafish Activity Prediction Benchmark measures progress on the problem of predicting cellular-resolution neural activity throughout…☆56Updated last week
- Geometric algebra in JAX and numpy☆85Updated 8 months ago
- Read and write Neuroglancer datasets programmatically.☆166Updated last week
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆55Updated 2 years ago
- Three-dimensional propagation and time-reversal of fluorescence images☆40Updated 6 years ago
- Python library for designing and training your own Diffusion Models with PyTorch☆289Updated 5 months ago