kevintownsend / bwt
This implements the Burrows Wheeler Transform using c++ templates.
☆8Updated 3 months ago
Alternatives and similar repositories for bwt:
Users that are interested in bwt are comparing it to the libraries listed below
- Fast and Strong Burrows Wheeler Model☆19Updated 6 years ago
- Fast C functions for the computing the positional popcount (pospopcnt).☆53Updated 5 years ago
- An exploratory implementation of bit overloads of the C++ standard algorithms☆18Updated 4 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 3 years ago
- Unstable O(n log n) sorting algorithm with O(n) memory☆60Updated last year
- msufsort parallel suffix array construction algorithm☆29Updated 4 years ago
- rANS coder (derived from https://github.com/rygorous/ryg_rans)☆83Updated 3 years ago
- An efficient external-memory algorithm for the construction of minimal perfect hash functions☆63Updated 10 months ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 2 years ago
- A benchmark for sorting algorithms☆59Updated 3 years ago
- An encoder/decoder collection for a sequence of integers☆32Updated 12 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆84Updated last year
- novel high throughput entropy encoder for BWT data☆14Updated 2 years ago
- Succinct Data Structure Library 3.0☆94Updated 6 months ago
- rans optimized tricks☆24Updated 6 years ago
- Experimental parallel compression algorithm☆24Updated 7 years ago
- Bit packed vector of integral values☆27Updated 2 months ago
- Pruning elements in SIMD vectors (i.e., packing left elements)☆65Updated last year
- Fast C header-only library for popcnt, pospopcnt, and set algebraic operations☆45Updated 5 years ago
- Bicriteria Data Compressor☆14Updated 7 years ago
- Fast in-place radix sort with STL-like API☆46Updated 8 years ago
- libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induce…☆200Updated last week
- A SIMD-based C++ library providing rank/select queries over mutable bitmaps.☆35Updated 2 years ago
- A hash table implementation using Robin Hood Linear Probing☆50Updated 10 years ago
- A compressed, associative, exact, and weighted dictionary for k-mers.☆84Updated 5 months ago
- Compact Tree Representation☆16Updated 8 years ago
- FPC - Fast Prefix Coder☆30Updated 2 years ago
- Generic hash table library in C☆31Updated last week
- Low memory multithreaded hash table☆24Updated 10 years ago
- Vectorized version of the PCG random number generator☆77Updated 3 weeks ago