kevintownsend / bwt
This implements the Burrows Wheeler Transform using c++ templates.
☆8Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for bwt
- Fast C functions for the computing the positional popcount (pospopcnt).☆53Updated 4 years ago
- Fast and Strong Burrows Wheeler Model☆19Updated 6 years ago
- Manual for the C++ vector class library☆29Updated last year
- Pruning elements in SIMD vectors (i.e., packing left elements)☆60Updated 9 months ago
- Experimental parallel compression algorithm☆24Updated 7 years ago
- The esa-matchfinder is a C99 library for efficient Lempel-Ziv factorization using enhanced suffix array (ESA).☆23Updated 11 months ago
- immintrin_dbg.h is an include file, a wrapper around immintrin.h. It implements most of AVX, AVX2, AVX-512 vector intrinsics to enable so…☆57Updated last year
- Support for ternary logic in SSE, XOP, AVX2 and x86 programs☆31Updated 3 years ago
- A SIMD-based C++ library providing rank/select queries over mutable bitmaps.☆35Updated last year
- Custom compression for CRAM and others.☆30Updated last week
- Miscellaneous files relating to Vector class library☆9Updated 2 years ago
- Compact Tree Representation☆16Updated 7 years ago
- AVX512 population count routines☆22Updated 5 years ago
- Interleaving bits from two sources using SIMD instructions.☆14Updated 6 years ago
- Massively Parallel ANS Decoding on GPUs☆28Updated 5 years ago
- novel high throughput entropy encoder for BWT data☆13Updated 2 years ago
- AVX-2 vectorised 8-bit positional popcount for Go☆23Updated 4 years ago
- A compressed, associative, exact, and weighted dictionary for k-mers.☆84Updated last month
- A benchmark for sorting algorithms☆59Updated 3 years ago
- A C++ container-like data structure for storing a vector of bits with fast appending on both sides and fast insertion in the middle, all …☆22Updated 2 years ago
- SIMD-accelerated UTF-8 to UTF-32 conversion☆10Updated 5 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 3 years ago
- msufsort parallel suffix array construction algorithm☆29Updated 4 years ago
- Test bench and scripts for testing VCL☆9Updated 11 months ago
- Fast random number generators: Vectorized (SIMD) version of xorshift128+☆111Updated 4 years ago
- LittleBit is a pure Huffman coding compression algorithm with the option of random access reading while offering competitive compression …☆12Updated 3 years ago
- libcubwt is a library for GPU accelerated suffix array and burrows wheeler transform construction.☆31Updated 9 months ago
- LZ Double factor Factorization.☆11Updated 7 years ago
- Octosort is an in-place stable adaptive block merge sort.☆18Updated 2 years ago
- SIMD recipes, for various platforms (collection of code snippets)☆48Updated 3 years ago