A transformer built from scratch in Rust.
☆33Jun 14, 2025Updated 8 months ago
Alternatives and similar repositories for rust_transformer
Users that are interested in rust_transformer are comparing it to the libraries listed below
Sorting:
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated last year
- ☆15Jan 28, 2026Updated last month
- AlfaPang builds pangenome graphs without alignments or references.☆15Nov 7, 2025Updated 3 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Ultra-rapid detection of viral variants directly from sequencing data☆36Feb 17, 2026Updated 2 weeks ago
- De novo clustering of long transcript reads into genes☆19Dec 15, 2025Updated 2 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- ☆18May 10, 2023Updated 2 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Jun 4, 2019Updated 6 years ago
- ☆19Feb 15, 2025Updated last year
- Fast sequence distance estimates☆26Jan 29, 2026Updated last month
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Sep 13, 2025Updated 5 months ago
- Rust convolutional neural network from scratch☆24Oct 5, 2024Updated last year
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Oct 15, 2025Updated 4 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 5 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated last month
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 6 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆28Apr 24, 2025Updated 10 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 6 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 6 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 9 months ago
- ☆35May 15, 2025Updated 9 months ago
- a high-performance computing solution designed to accelerate matrix operations using Nvidia's CUDA technology with Rust's ndarray data st…☆37May 18, 2024Updated last year
- Iterate over minimizers of a DNA sequence☆31Jul 12, 2024Updated last year
- GFA parser in Rust☆30May 26, 2023Updated 2 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆35Jul 21, 2025Updated 7 months ago
- DBSCAN, HDBSCAN, and OPTICS clustering algorithms.☆43Dec 16, 2025Updated 2 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Nov 19, 2024Updated last year
- C# 基于.NET5开发的WPF串口助手☆13Mar 21, 2022Updated 3 years ago
- Optimal sequence-to-graph alignment with recombinations☆40Jul 25, 2025Updated 7 months ago
- A trait + derive to recursively compute / print the memory usage of a data structure.☆40Feb 11, 2026Updated 3 weeks ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆34May 23, 2025Updated 9 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- A new CASPER toolflow based on an HDL primitives library☆17Apr 11, 2012Updated 13 years ago