fk128 / sarcopenia-ai
Code for paper Kanavati, F. et al. (2020). Fully-automated deep learning slice-based muscle estimation from CT images for sarcopenia assessment. arXiv preprint arXiv:2006.06432.
☆30Updated last year
Alternatives and similar repositories for sarcopenia-ai:
Users that are interested in sarcopenia-ai are comparing it to the libraries listed below
- primakov / DuneAI-Automated-detection-and-segmentation-of-non-small-cell-lung-cancer-computed-tomography-imagesRepository supporting the original research paper in Nature Communications (Primakov et al. 2022)☆76Updated 8 months ago
- Pytorch implementation of the paper Iterative fully convolutional neural networks for automatic vertebra segmentation accepted in MIDL201…☆63Updated last year
- Hand-crafted radiomics and deep learning-based radiomcis features extraction.☆83Updated 2 years ago
- 3D-Unet: patched based Pytorch implementation for medical images segmentation☆63Updated 3 years ago
- 💥 Command line tool for automatic liver parenchyma and liver vessel segmentation in CT using a pretrained deep learning model☆66Updated 5 months ago
- DICOM RT-Struct to mask☆101Updated last year
- Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]☆32Updated 2 years ago
- This is a 3D Slicer extension for segmentation and spatial reconstruction of infiltrated, collapsed, and emphysematous areas in lung CT.☆75Updated 5 months ago
- ☆38Updated last year
- End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Ma…☆62Updated 4 years ago
- Lung Segmentation UNet model on 3D CT scans☆50Updated 5 years ago
- Developing a well-documented repository for the Lung Nodule Detection task on the Luna16 dataset. This work is inspired by the ideas of t…☆80Updated 3 years ago
- Precision medicine toolbox☆69Updated 11 months ago
- Spine segmentation using unet, the code is written in Python.☆31Updated 4 years ago
- Implementation of "Multi-scale Gradual Itegration Convolutional Neural Network for False Positive Reduction in Pulmonary Nodule Detection…☆36Updated 5 years ago
- [MedIA2022]WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image☆159Updated 6 months ago
- [MICCAI' 19] NoduleNet: Decoupled False Positive Reduction for Pulmonary Nodule Detection and Segmentation☆202Updated 4 years ago
- This repository is an unoffical PyTorch implementation of Medical classification in 2D and 3D.☆82Updated 3 years ago
- This project uses a process known as segmentation to extract individual lung components from CT scans such as the airway, bronchioles, ou…☆27Updated 4 years ago
- Robust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data☆93Updated 2 years ago
- Workflow for Optimal Radiomics Classification☆74Updated 3 weeks ago
- ☆76Updated last year
- A package to compute medical segmentation metrics.☆155Updated 8 months ago
- ☆30Updated 3 years ago
- DeepSEED: 3D Squeeze-and-Excitation Encoder-Decoder ConvNets for Pulmonary Nodule Detection☆112Updated last year
- Hierarchical probabilistic 3D U-Net, with attention mechanisms (—𝘈𝘵𝘵𝘦𝘯𝘵𝘪𝘰𝘯 𝘜-𝘕𝘦𝘵, 𝘚𝘌𝘙𝘦𝘴𝘕𝘦𝘵) and a nested decoder str…☆40Updated 3 years ago
- We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D U…☆110Updated 4 years ago
- Variant VNet family☆84Updated 4 years ago
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆82Updated 2 years ago
- Automatic image (2D) and volume (3D) binary semantic segmentation of pancreas computed tomography (CT) using UNet architecture.☆45Updated 4 years ago