chrisby / ml-on-fhirLinks
A work in progress library that fuses the HL7 FHIR standard with scikit-learn
☆21Updated 2 years ago
Alternatives and similar repositories for ml-on-fhir
Users that are interested in ml-on-fhir are comparing it to the libraries listed below
Sorting:
- Robust de-identification of medical notes using transformer architectures☆57Updated 3 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 4 months ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆48Updated last year
- A generator of synthetic psychiatric notes.☆17Updated 5 years ago
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆57Updated this week
- ☆29Updated 4 years ago
- Query FHIR apis with SQL, for analytics and ML.☆25Updated 4 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆88Updated 3 years ago
- pharmpy is an umbrella library for searching the FDA NDC directory, Established Pharmacologic Class (EPC), Anatomical Therapeutic Chemica…☆17Updated 5 years ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆61Updated 3 years ago
- FHIR to pandas dataframe for data analytics, AI and ML!☆44Updated this week
- Sentence tokenizer for clinical/medical text.☆28Updated last year
- CliniDeID automatically de-identifies clinical text notes according to the HIPAA Safe Harbor method. It accurately finds identifiers and …☆10Updated 2 years ago
- FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…☆73Updated last month
- Converts DICOM Resources to FHIR Resources☆22Updated 5 years ago
- ☆23Updated 6 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆32Updated last year
- Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning☆48Updated 3 years ago
- Work on using Retrieval-Augmented Generation (RAG) to combine Fast Healthcare Interoperable Resources (FHIR) with Generative AI.☆112Updated last year
- ☆18Updated 5 years ago
- ☆23Updated 3 years ago
- A deidentifier / deidentification pipeline developed by Stanford and Penn as part of the MIDRC organization.☆99Updated 2 months ago
- Runtime repository for the SNOMED CT Entity Linking challenge on DrivenData☆14Updated last year
- A toolkit for evaluating and monitoring AI models in clinical settings☆87Updated this week
- This project develops compact transformer models tailored for clinical text analysis, balancing efficiency and performance for healthcare…☆18Updated last year
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆97Updated 8 months ago
- The Simple EMR System is a rapidly deployable and readily customizable electronic medical record (EMR) user interface for supporting labo…☆19Updated last month
- Fact Verification for Clinical Notes with LLMs☆36Updated last month
- FHIR Python Analysis Client and Kit (FHIRPACK) is a general purpose FHIR client that simplifies the access, analysis and representation o…☆49Updated 2 years ago
- LLM Embeddings for ICD 10 Data☆63Updated last year