chris-lovejoy / CodingForMedicineLinks
A series of educational exercises, applying programming to medicine
☆25Updated last year
Alternatives and similar repositories for CodingForMedicine
Users that are interested in CodingForMedicine are comparing it to the libraries listed below
Sorting:
- The missing middleware layer in healthcare AI 💫 🏥☆37Updated last week
- FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…☆67Updated last week
- Electronic Health Record Analysis with Python.☆294Updated this week
- [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM☆29Updated this week
- Work on using Retrieval-Augmented Generation (RAG) to combine Fast Healthcare Interoperable Resources (FHIR) with Generative AI.☆102Updated last year
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated 2 weeks ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆80Updated this week
- A curated list of awesome open source healthcare tools, algorithms, datasets and research papers.☆270Updated 5 months ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆144Updated last week
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆176Updated 3 weeks ago
- General tutorials for the setup and use of MedCAT.☆37Updated last month
- APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models☆24Updated last month
- Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work☆12Updated 4 years ago
- FHIR to pandas dataframe for data analytics, AI and ML!☆38Updated this week
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆63Updated last month
- AI model evaluation with a focus on healthcare☆226Updated 3 weeks ago
- A toolkit for evaluating and monitoring AI models in clinical settings☆85Updated last week
- FHIR Python Analysis Client and Kit (FHIRPACK) is a general purpose FHIR client that simplifies the access, analysis and representation o…☆48Updated last year
- Exploring ethical and practical applications of LLMs in the NHS / health☆13Updated last year
- Winners of the SNOMED CT Entity Linking Challenge☆37Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆94Updated last week
- A simple python library for ICD-10 codes☆44Updated 2 weeks ago
- PARROT is a collaborative initiative to create and annotate radiology reports to facilitate the access to high-quality multi-lingual medi…☆13Updated 8 months ago
- ETL Tool for converting datasets to OMOP CDM☆33Updated 2 years ago
- A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.☆151Updated 3 months ago
- Common clinical models in the forms of openEHR archetypes and GDL guidelines☆37Updated this week
- Course materials for OHDSI ETL tutorial☆48Updated 8 months ago
- Clinical text summarization by adapting large language models☆143Updated 11 months ago
- A Demonstration using LLMs to Explain Health Records☆128Updated this week
- Open drug data pipelines curated by pharmacists.☆63Updated last week