alisonmitchell / Biomedical-Knowledge-GraphLinks
Information extraction from unstructured text to build a knowledge graph using techniques from traditional NLP to pre-trained transformers and LLMs for NER and Linking, and Relation Extraction.
☆16Updated 3 weeks ago
Alternatives and similar repositories for Biomedical-Knowledge-Graph
Users that are interested in Biomedical-Knowledge-Graph are comparing it to the libraries listed below
Sorting:
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆81Updated 2 years ago
- A Python package to download full article PDFs from OA publications☆53Updated last year
- A curated list of biomedical knowledge graphs and of resources for their construction.☆73Updated last year
- a module to calculate the MeSH similarity☆27Updated 4 years ago
- a customzable pipeline for information extraction☆18Updated 8 months ago
- Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nat…☆100Updated 4 years ago
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆142Updated 5 months ago
- DEPRECATED: This repository contains demo data for TVB software. Use the Zenodo Copy☆17Updated last year
- ☆29Updated 3 weeks ago
- Vector Guideline Comparison for Medical Oncology☆38Updated last year
- Frontend for OpenAlex☆37Updated this week
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆55Updated 3 weeks ago
- AstorAI is a user-friendly medical chatbot powered by Retrieval-Augmented Generation (RAG) and the advanced LLama 3 model. It offers real…☆22Updated last year
- Cross matching drugs from different databases ( Drugbank, STITCH, ChEMBL PubChem, UMLS, TTD, KEGG, ZINC ) and saving in a structured TSV …☆34Updated 2 years ago
- PyTrial: A Comprehensive Platform for Artificial Intelligence for Drug Development☆121Updated 2 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- ☆58Updated 4 months ago
- LLM for genomic☆14Updated last year
- [ISMB 2024] Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models☆64Updated last year
- Template for creating a BioCypher-driven knowledge graph☆13Updated 3 weeks ago
- ☆11Updated last year
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆77Updated 2 weeks ago
- ☆32Updated last month
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32Updated 2 years ago
- ☆39Updated 6 months ago
- SORTED: A curated collection of interesting ideas, tools, and resources in neuroscience, data management, and data science, all in the sp…☆27Updated 5 months ago
- This is a AUTOSAR documents specific retriever based on LLM and RAG.☆16Updated last year
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆123Updated 2 years ago
- Clinical decision support system by HealthRex laboratory at Stanford University.☆118Updated 2 weeks ago
- A specialized LLM for study search, study screening, and data extraction from medical literature.☆26Updated 10 months ago