TheBiomics / Molecular-DynamicsLinks
☆20Updated last year
Alternatives and similar repositories for Molecular-Dynamics
Users that are interested in Molecular-Dynamics are comparing it to the libraries listed below
Sorting:
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆71Updated 4 months ago
- Package for storage and analysis of virtual screenings run with AutoDock-GPU and AutoDock Vina☆50Updated last month
- A Consensus Docking Plugin for PyMOL☆75Updated last year
- Notebooks and environment set up for IQB 2024 workshop - Python for Molecular Docking☆69Updated 7 months ago
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆52Updated this week
- (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆70Updated 2 years ago
- Compilation of chemoinformatics and machine learning techniques☆59Updated 2 weeks ago
- (Windows) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆67Updated 3 years ago
- Fully automated high-throughput MD pipeline☆63Updated last month
- Molecular Dynamics for Experimentalists☆62Updated last week
- MD pharmacophores and virtual screening☆33Updated last year
- Python code to run Supervised Molecular Dynamics (SuMD) simulations☆15Updated last year
- ☆11Updated 4 years ago
- Molecular Dynamics on Google Compute Engine, Colab, AWS (Amazon Web Services) and other Cloud Computing services☆18Updated 8 months ago
- Jupyter Notebooks for Molecular Dynamics☆42Updated 3 weeks ago
- User friendly molecular dynamics simulation combining GROMACS and Google Colab: A complete guide☆14Updated this week
- Input files for GROMACS tutorials written for the Journal of Physical Chemistry B☆20Updated last year
- A fast and simple Molecular Dynamics tutorial using GROMACS and PACKMOL.☆36Updated 2 years ago
- Ligand-Protein Interaction Mapping☆57Updated 3 months ago
- This repository contains notebooks for the workshop Python for Cheminformatics-Driven Molecular Docking held on May 1, 2025 in collaborat…☆82Updated 2 months ago
- MM/PBSA binding free energy calculation☆23Updated last year
- Fully automated docking pipeline (can be run in distributed environments)☆46Updated 3 weeks ago
- ☆92Updated 5 months ago
- ☆37Updated 2 years ago
- Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…☆59Updated last week
- Simple protein-ligand complex simulation with OpenMM☆86Updated last year
- PandaDock: A Physics-Based Molecular Docking using Python☆72Updated last week
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆71Updated 6 months ago
- Google Colab notebooks for running molecular dynamics simulations with GROMACS☆40Updated last year
- ☆51Updated 2 years ago