Alternatives and similar repositories for preprocessing

Users that are interested in preprocessing are comparing it to the libraries listed below

• SynthRAD2023 / preprocessing
  Preprocessing scripts: from dicom to aligned nitfy for SynthRAD2023 Grand Challenge
  ☆70Updated 2 years ago
• RiqiangGao / GDP-HMM_AAPMChallenge
  The code base for Generalizable Dose Prediction for Heterogenous Multi-Cohort and Multi-Site Radiotherapy Planning (GDP-HMM) challenge at…
  ☆65Updated last month
• lab-midas / TCIA_processing
  autoPET TCIA pipeline
  ☆59Updated 3 years ago
• xmed-lab / TriALS
  MICCAI 2024/2025: nnUNet incorporating additional baselines as SAMed️, Mamba Variants, and MedNeXT to establish a benchmark for segmentat…
  ☆121Updated 5 months ago
• ai-med / PASTA
  Official pytorch implementation of Paper - 🍝 PASTA: Pathology-Aware MRI to PET Cross-modal Translation with Diffusion Models - MICCAI 20…
  ☆34Updated 7 months ago
• StanfordMIMI / MedVAE
  [MIDL 2025] Efficient Automated Interpretation of Medical Images with Large-Scale Generalizable Autoencoders
  ☆169Updated last month
• MIC-DKFZ / dynamic-network-architectures
  ☆140Updated 2 months ago
• MIC-DKFZ / nnssl
  ☆124Updated 3 months ago
• bwittmann / vesselFM
  A foundation model for universal 3D blood vessel segmentation. Paper accepted @ CVPR25.
  ☆138Updated last month
• robert-graf / Readable-Conditional-Denoising-Diffusion
  Readable Conditional Denoising Diffusion
  ☆44Updated 2 months ago
• ReubenDo / MHVAE
  ☆15Updated 2 years ago
• jongdory / ALDM
  Adaptive Latent Diffusion Model for 3D Medical Image
  ☆186Updated last week
• jianqingzheng / def_diff_rec
  [Preprint] Deformation-Recovery Diffusion Model (DRDM): Instance Deformation for Image Manipulation and Synthesis
  ☆26Updated 2 months ago
• Wangyulin-user / TUMSyn
  Official code of "Towards General Text-guided Universal Image Synthesis Framework for Customized Multimodal Brain MRI"
  ☆36Updated 2 months ago
• david-stojanovski / echo_from_noise
  Code to implement "Echo from noise: synthetic ultrasound image generation using diffusion models for real image segmentation"
  ☆51Updated last year
• uncbiag / uniGradICON
  uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)
  ☆205Updated this week
• WuLabMDA / Synthetic-PET-from-CT
  ☆25Updated 3 months ago
• lseventeen / DIAS
  [MedIA2024]DIAS: A Dataset and Benchmark for Intracranial Artery Segmentation in DSA sequences
  ☆52Updated last year
• aiforvision / OCTA-autosegmentation
  Repository for the paper "Synthetic optical coherence tomography angiographs for detailed retinal vessel segmentation without human annot…
  ☆47Updated 5 months ago
• shaoyanpan / Synthetic-CT-generation-from-MRI-using-3D-transformer-based-denoising-diffusion-model
  This is the repository for the paper published in Medical Physics: "Synthetic CT generation from MRI using 3D transformer-based denoising…
  ☆62Updated last year
• neheller / kits23
  The official repository of the 2023 Kidney Tumor Segmentation Challenge (KiTS23)
  ☆133Updated 4 months ago
• RPIDIAL / DINO-Reg
  ☆52Updated 9 months ago
• alibaba-damo-academy / self-supervised-anatomical-embedding-v2
  ☆72Updated last year
• uni-medical / A-Eval
  MedIA 2025 | A-Eval: A Benchmark for Cross-Dataset and Cross-Modality Evaluation of Abdominal Multi-Organ Segmentation
  ☆33Updated 11 months ago
• davidiommi / 3D-CycleGan-Pytorch-MedImaging
  Pytorch pipeline for 3D image domain translation using Cycle-Generative-Adversarial-networks, without paired examples.
  ☆177Updated 4 years ago
• alibaba-damo-academy / samconvex
  [MICCAI 2023] SAMConvex: Fast Discrete Optimization for CT Registration using Self-supervised Anatomical Embedding and Correlation Pyrami…
  ☆21Updated 9 months ago
• hulinkuang / Cl-SegNet
  Cl-SegNet
  ☆19Updated 2 years ago
• mirthAI / CSA-Net
  ☆42Updated last year
• JHU-MedImage-Reg / MedImgReg_Survey
  A comprehensive list of papers on learning-based image registration, as well as python implementation of various loss functions and evalu…
  ☆114Updated 7 months ago
• ubc-tea / SADM-Longitudinal-Medical-Image-Generation
  The official implementation of our IPMI 2023 paper "SADM: Sequence-Aware Diffusion Model for Longitudinal Medical Image Generation"
  ☆68Updated 2 years ago