Alternatives and similar repositories for FunGen2025:

Users that are interested in FunGen2025 are comparing it to the libraries listed below

• xia-lab / MetaboAnalystR
  R package for MetaboAnalyst
  ☆341Updated this week
• hbctraining / DGE_workshop
  ☆389Updated 3 years ago
• noriakis / ggkegg
  Analyzing and visualizing KEGG information using the grammar of graphics
  ☆226Updated 3 weeks ago
• hbctraining / Intro-to-DGE
  ☆192Updated last month
• taowenmicro / EasyMicrobiomeR
  Using R language in microbiome analysis
  ☆321Updated last year
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆387Updated last month
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆243Updated last week
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆281Updated 6 months ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆428Updated 8 years ago
• alserglab / fgsea
  Fast Gene Set Enrichment Analysis
  ☆396Updated last week
• gladstone-institutes / Bioinformatics-Workshops
  Workshops presented by the Gladstone Bioinformatics Core
  ☆223Updated 2 weeks ago
• junjunlab / GseaVis
  An implement R package to visualize GSEA results
  ☆164Updated 3 weeks ago
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆233Updated last week
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆123Updated 2 weeks ago
• jmzeng1314 / my-R
  a small collection for my R scripts
  ☆166Updated 6 years ago
• Olink-Proteomics / OlinkRPackage
  Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…
  ☆108Updated this week
• kpatel427 / YouTubeTutorials
  ☆315Updated 6 months ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆128Updated this week
• tjhwangxiong / TCGAplot
  A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME,…
  ☆102Updated 3 weeks ago
• jmzeng1314 / 5years
  ☆239Updated 5 years ago
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆187Updated last week
• pachterlab / sleuth
  Differential analysis of RNA-Seq
  ☆304Updated 9 months ago
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆179Updated last year
• picrust / picrust2
  Code, unit tests, and tutorials for running PICRUSt2
  ☆346Updated 2 weeks ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆109Updated last year
• YongxinLiu / EasyAmplicon
  Easy Amplicon data analysis pipeline
  ☆287Updated last week
• Xinglab / rmats-turbo
  ☆252Updated 5 months ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆119Updated 4 years ago
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆483Updated 2 weeks ago
• Mo7ammedFarahat / BioinformaticsWorkshop-Jan25
  Introduction to Bioinformatics Traning @Medical Ain Shams Research Institute (MASRI) Jan-2025
  ☆10Updated 2 months ago