Alternatives and similar repositories for FunGen2025

Users that are interested in FunGen2025 are comparing it to the libraries listed below

• xia-lab / MetaboAnalystR
  R package for MetaboAnalyst
  ☆359Updated last week
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆416Updated last month
• hbctraining / Intro-to-DGE
  ☆207Updated last month
• noriakis / ggkegg
  Analyzing and visualizing KEGG information using the grammar of graphics
  ☆234Updated this week
• alserglab / fgsea
  Fast Gene Set Enrichment Analysis
  ☆418Updated last week
• hbctraining / DGE_workshop
  ☆400Updated 3 years ago
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆248Updated 3 weeks ago
• PoisonAlien / maftools
  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
  ☆477Updated 3 months ago
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆239Updated 5 months ago
• kpatel427 / YouTubeTutorials
  ☆353Updated last year
• hbctraining / Training-modules
  Materials for short, half-day workshops
  ☆338Updated 3 weeks ago
• mixOmicsTeam / mixOmics
  Development repository for the Bioconductor package 'mixOmics '
  ☆213Updated 5 months ago
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆505Updated last week
• junjunlab / GseaVis
  An implement R package to visualize GSEA results
  ☆189Updated last month
• Xinglab / rmats-turbo
  ☆275Updated 10 months ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆445Updated 8 years ago
• kevinblighe / EnhancedVolcano
  Publication-ready volcano plots with enhanced colouring and labeling
  ☆439Updated last year
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆326Updated last month
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆297Updated 2 months ago
• immunomind / immunarch
  🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design
  ☆327Updated last month
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆145Updated 2 years ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆346Updated last month
• hbctraining / Intro-to-bulk-RNAseq
  Introduction to bulk RNA-seq
  ☆122Updated 5 months ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆171Updated 4 years ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆314Updated 2 years ago
• al2na / methylKit
  R package for DNA methylation analysis
  ☆237Updated last month
• taowenmicro / EasyMicrobiomeR
  Using R language in microbiome analysis
  ☆341Updated 2 years ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆323Updated 4 years ago
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆266Updated 2 years ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆304Updated 5 years ago