Alternatives and similar repositories for FunGen2025

Users that are interested in FunGen2025 are comparing it to the libraries listed below

• xia-lab / MetaboAnalystR
  R package for MetaboAnalyst
  ☆370Updated last week
• hbctraining / Intro-to-DGE
  ☆211Updated 3 months ago
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆426Updated last week
• alserglab / fgsea
  Fast Gene Set Enrichment Analysis
  ☆427Updated last week
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆250Updated this week
• PoisonAlien / maftools
  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
  ☆481Updated 5 months ago
• noriakis / ggkegg
  Analyzing and visualizing KEGG information using the grammar of graphics
  ☆235Updated last month
• hbctraining / DGE_workshop
  ☆403Updated 3 years ago
• jmzeng1314 / my-R
  a small collection for my R scripts
  ☆166Updated 6 years ago
• junjunlab / GseaVis
  An implement R package to visualize GSEA results
  ☆199Updated 3 months ago
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆245Updated last month
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆511Updated last month
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆303Updated last month
• Xinglab / rmats-turbo
  ☆282Updated last month
• al2na / methylKit
  R package for DNA methylation analysis
  ☆243Updated 3 months ago
• hbctraining / Training-modules
  Materials for short, half-day workshops
  ☆341Updated 3 weeks ago
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆333Updated 3 weeks ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆158Updated 3 years ago
• gladstone-institutes / Bioinformatics-Workshops
  Workshops presented by the Gladstone Bioinformatics Core
  ☆242Updated 3 weeks ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆348Updated last week
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆334Updated 3 weeks ago
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆268Updated 2 years ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆355Updated last week
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆317Updated 2 years ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆313Updated 5 years ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆447Updated 8 years ago
• kpatel427 / YouTubeTutorials
  ☆362Updated last year
• crazyhottommy / TCR-BCR-seq-analysis
  T/B cell receptor sequencing analysis notes
  ☆268Updated last year
• pachterlab / sleuth
  Differential analysis of RNA-Seq
  ☆311Updated 6 months ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆156Updated 2 years ago