MedVisBonn / eyepy
A python package to read, analyse and visualize OCT and fundus data from various sources.
☆55Updated last year
Alternatives and similar repositories for eyepy:
Users that are interested in eyepy are comparing it to the libraries listed below
- Retinal image analysis in MATLAB☆24Updated last month
- vessel segmentation, artery and vein, optic disc, vascular feature analysis☆101Updated 2 weeks ago
- Personal paper list on OCT segmentation☆28Updated 3 years ago
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆98Updated 2 weeks ago
- Deep Learning Registration of the Prostate☆54Updated last year
- DICOM RT-Struct to mask☆101Updated last year
- Implementation of the DeepVesselNet deep learning network☆146Updated last year
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆82Updated 2 years ago
- Workflow for Optimal Radiomics Classification☆74Updated last month
- ☆58Updated last month
- Pre-trained models and utilities for deep learning on medical images in Python☆214Updated 3 weeks ago
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆70Updated 8 months ago
- ☆33Updated last year
- Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastix☆50Updated last month
- NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.☆147Updated 3 years ago
- Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.☆212Updated last week
- Computed tomography to body composition (Comp2Comp).☆73Updated 3 months ago
- The easiest tool for experimenting with radiomics features.☆40Updated 11 months ago
- Visualization for radiomics feature generated by pyradiomics☆50Updated 3 months ago
- OCT preprocessing: Fully Convolutional Boundary Regression for Retina OCT Segmentation☆48Updated 4 years ago
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆34Updated 3 weeks ago
- uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)☆115Updated 2 weeks ago
- A module for 3D image augmentations for deep learning, specifically medical images such as CT, MRI.☆27Updated 4 years ago
- Intensity normalization of multi-channel MRI images using the method proposed by Nyul et al. 2000☆58Updated 3 years ago
- new and more efficient version for 3D discrete deformable registration, reaching the highest accuracy in several benchmarks☆104Updated last year
- Robust Brain Extraction Tool for CT Head Images☆46Updated 4 years ago
- This is a 3D Slicer extension for segmentation and spatial reconstruction of infiltrated, collapsed, and emphysematous areas in lung CT.☆76Updated 6 months ago
- Public code for 3D version of Pyramid Transformer Network (PTNet). Our PTNet achieve consistently better performance in high-resolution a…☆12Updated last year
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆52Updated 3 weeks ago
- 3D-Unet: patched based Pytorch implementation for medical images segmentation☆63Updated 3 years ago