Alternatives and similar repositories for COVID-19

Users that are interested in COVID-19 are comparing it to the libraries listed below

• OHDSI / Hades
  Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.
  ☆27Updated 4 months ago
• rjake / ICD10-hierarchy
  ☆16Updated last month
• ropensci-archive / cleanEHR
  ARCHIVED Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical…
  ☆55Updated 3 years ago
• OHDSI / FeatureExtraction
  An R package for generating features (covariates) for a cohort using data in the Common Data Model.
  ☆71Updated 2 weeks ago
• wtcooper / icdcoder
  R package: ICD-9 and ICD-10 code utility functions and datasets
  ☆20Updated 10 years ago
• OHDSI / CohortDiagnostics
  An R package for performing various cohort diagnostics.
  ☆48Updated last week
• OHDSI / Tutorial-CDM
  Training materials for Vocabulary & CDM Tutorial.
  ☆22Updated 6 years ago
• OHDSI / QueryLibrary
  This is an R package that implements a library of standard queries that run against the OMOP-CDM.
  ☆18Updated last year
• BenGlicksberg / PatientExploreR
  Dynamic visualization of Electronic Health Record data in the OMOP framework
  ☆29Updated 4 years ago
• chop-dbhi / data-models
  Collection of various biomedical data models in parseable formats.
  ☆29Updated last month
• nt-williams / rxnorm
  R interface to NLM RxNorm API to get drug names and class based on RxCUI
  ☆28Updated 10 months ago
• OHDSI / PheValuator
  An R package for evaluating phenotype algorithms.
  ☆21Updated 2 months ago
• BHFDSC / Linked-EHR-England-2021
  Publication: Linked electronic health records for research on a nationwide cohort including over 54 million people in England
  ☆19Updated 2 years ago
• OHDSI / StudyProtocolSandbox
  This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.
  ☆33Updated 8 months ago
• OHDSI / CohortMethod
  An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
  ☆89Updated last week
• yikuan8 / MIMIC-IV-Postgres
  Installing MIMIC-IV in a local Postgres database
  ☆46Updated 4 years ago
• LifebellAI / mimiciv-queries
  queries for mimic-iv
  ☆11Updated 4 years ago
• tomolopolis / SNOMED-CT_Analysis
  Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work
  ☆14Updated 5 years ago
• OHDSI / ShinyDeploy
  Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.
  ☆27Updated 11 months ago
• OHDSI / PatientLevelPrediction
  An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
  ☆213Updated last week
• Healthink / PIC
  PIC (Pediatric Intensive Care) database
  ☆46Updated 3 years ago
• spiros / chronological-map-phenotypes
  Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
  ☆51Updated last year
• OHDSI / TheBookOfOhdsi
  The Book of OHDSI repository
  ☆121Updated last year
• OHDSI / StudyProtocols
  Repository of OHDSI Collaborative Research Protocols
  ☆40Updated 2 years ago
• kdpsingh / clinspacy
  Clinical Natural Language Processing using spaCy, scispacy, and medspacy
  ☆101Updated last year
• MIT-LCP / mimic-workshop
  Introduction to MIMIC-III, the Critical Care Database
  ☆86Updated 8 years ago
• BenGlicksberg / ROMOP
  R package to easily interface with OMOP-formatted EHR data.
  ☆37Updated 5 years ago
• OHDSI / OMOP-Queries
  ☆31Updated 7 years ago
• OHDSI / ETL---Korean-NSC
  ETL code for converting Korean National Sample Cohort (NSC) derived from national insurance health service into OMOP-CDM v5 developed by …
  ☆10Updated 6 years ago
• skparr / ml_loinc_mapping
  ☆17Updated 7 years ago