yankun1992 / fastbloomView external linksLinks
A fast bloom filter implemented by Rust for Python! 10x faster than pybloom!
☆110Sep 1, 2025Updated 5 months ago
Alternatives and similar repositories for fastbloom
Users that are interested in fastbloom are comparing it to the libraries listed below
Sorting:
- FastUUID is a library which provides CPython bindings to Rust's UUID library☆179Oct 19, 2025Updated 3 months ago
- Concurrency library☆16Oct 13, 2024Updated last year
- A syntactically aware search-and-replace tool for Python.☆15Jul 15, 2025Updated 6 months ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 6 years ago
- A prefix sum implementation rust.☆13Jan 2, 2019Updated 7 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- A hash table with strong order and fast iteration; access items by key or sequence index☆52Jan 7, 2026Updated last month
- Just another minhash implementation.☆12Updated this week
- 🔊 Play music and sounds in your Python scripts, synchronously and asynchronously.☆13Jan 18, 2024Updated 2 years ago
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆13Mar 22, 2025Updated 10 months ago
- DiskANNrs☆36Feb 5, 2026Updated last week
- Calculation of euclidean distance between vectors, with SIMD☆13Jan 17, 2024Updated 2 years ago
- ☆14Jan 28, 2026Updated 2 weeks ago
- Small utility library for multi-platform privilege escalation☆35Dec 25, 2025Updated last month
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- The Multi-Process Dict for Python 3☆15Mar 11, 2019Updated 6 years ago
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.☆11Apr 17, 2024Updated last year
- ☆12Aug 21, 2024Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 9 months ago
- ☆351May 17, 2024Updated last year
- Ancestral Sequence Reconstruction in Python☆14May 9, 2019Updated 6 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 2 months ago
- Ultra-rapid detection of viral variants directly from sequencing data☆34Feb 6, 2026Updated last week
- Rust crate to deal with phylogenetic trees☆14Dec 3, 2025Updated 2 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- Converting genomic sequence data to tensor-valued orthogonal polynomials and projecting phenotypes onto sequence space.☆17Apr 2, 2025Updated 10 months ago
- Simulation tool for ChIP- and other -seq experiments☆14Mar 13, 2023Updated 2 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 10 years ago
- Count lines of code across your entire dependency tree☆22May 13, 2024Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆19Jan 22, 2026Updated 3 weeks ago
- FM-index representation of a de Bruijn graph☆26Aug 7, 2017Updated 8 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Jun 4, 2019Updated 6 years ago
- Easily schedule single or recurring sync/async tasks☆16Apr 28, 2021Updated 4 years ago
- Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/clien…☆12May 28, 2022Updated 3 years ago