Programmer friendly subprocess wrapper
☆106Oct 29, 2023Updated 2 years ago
Alternatives and similar repositories for python-executor
Users that are interested in python-executor are comparing it to the libraries listed below
Sorting:
- Useful property variants for Python programming☆13Mar 2, 2020Updated 5 years ago
- A Python wrapper library for subprocess module.☆24Nov 24, 2025Updated 3 months ago
- Python wrapper of a Rust CEL implementation☆29Feb 8, 2026Updated 2 weeks ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 8 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- A pipeline for scRNA analysis under HPC☆11Jul 15, 2024Updated last year
- A Model for Django Models to inherit (and utilities) for abstracting horizontal sharding on MySQL. Follow the instructions and grow table…☆21Jun 22, 2013Updated 12 years ago
- ☆14Sep 11, 2023Updated 2 years ago
- Linter rules for Nextflow DSL scripts☆34Feb 16, 2026Updated last week
- A Nextflow pipeline for genome and pan-genome annotation☆15Feb 3, 2026Updated 3 weeks ago
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- Application which generates SWID-Tags from Linux package managers like dpkg, rpm or pacman.☆16Sep 9, 2021Updated 4 years ago
- Convert vcf in parquet☆29Jan 23, 2025Updated last year
- Containers with systemd-nspawn☆23Mar 12, 2025Updated 11 months ago
- A small data lake meant for solitary use☆16Jan 28, 2025Updated last year
- A command line program for large scale buffering between piped programs☆16Nov 19, 2021Updated 4 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Nov 14, 2025Updated 3 months ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Dec 2, 2025Updated 2 months ago
- A slightly opinionated iPython profile for interactive development☆23Feb 13, 2022Updated 4 years ago
- Make a Docker container from a Python app with a pip requirements.txt file☆14May 1, 2015Updated 10 years ago
- Presto docker image based on alpine☆15Nov 3, 2020Updated 5 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Jun 17, 2022Updated 3 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated last year
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated last month
- Python3 Port of RunSnakeRun☆19Feb 9, 2023Updated 3 years ago
- Basecalling configuration prediction through FASTQ files☆33Nov 24, 2025Updated 3 months ago
- Variant call adjudication☆16Jun 13, 2024Updated last year
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago
- ☆17Jul 27, 2023Updated 2 years ago
- a quick shiny server in a Singularity Container. For @griznog!☆19Nov 6, 2018Updated 7 years ago
- Modular and easily extendable tool to manipulate Katello/Satellite 6☆15Sep 2, 2021Updated 4 years ago
- Utilities to help with testing command line scripts☆60Apr 9, 2025Updated 10 months ago
- Newsfeed-style event tracking and subscription management for django-entity.☆21Oct 31, 2023Updated 2 years ago
- Python HAR Parser Library☆16Mar 15, 2018Updated 7 years ago
- The Nextflow language server☆28Feb 11, 2026Updated 2 weeks ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆19Feb 28, 2022Updated 3 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Performance testing of OpenStack☆17Aug 21, 2018Updated 7 years ago